Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0981 and Shewana3_R0030 are separated by 305 nucleotides Shewana3_R0030 and Shewana3_0982 are separated by 170 nucleotides Shewana3_0982 and Shewana3_0983 are separated by 60 nucleotides Shewana3_0983 and Shewana3_0984 overlap by 11 nucleotides
Shewana3_0981: Shewana3_0981 - hypothetical protein (RefSeq), at 1,151,928 to 1,152,896
_0981
Shewana3_R0030: Shewana3_R0030 - tRNA-Trp (RefSeq), at 1,153,202 to 1,153,278
_R0030
Shewana3_0982: Shewana3_0982 - hypothetical protein (RefSeq), at 1,153,449 to 1,153,727
_0982
Shewana3_0983: Shewana3_0983 - TonB-dependent siderophore receptor (RefSeq), at 1,153,788 to 1,155,959
_0983
Shewana3_0984: Shewana3_0984 - hypothetical protein (RefSeq), at 1,155,949 to 1,157,154
_0984
Position (kb)
1153
1154
1155
1156 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1153.079 kb on + strand at 1153.401 kb on - strand at 1153.437 kb on - strand at 1153.465 kb on + strand at 1153.835 kb on - strand at 1154.149 kb on - strand, within Shewana3_0983 at 1154.347 kb on + strand, within Shewana3_0983 at 1154.432 kb on + strand, within Shewana3_0983 at 1154.587 kb on + strand, within Shewana3_0983 at 1154.741 kb on - strand, within Shewana3_0983 at 1155.036 kb on + strand, within Shewana3_0983 at 1155.084 kb on - strand, within Shewana3_0983 at 1155.193 kb on - strand, within Shewana3_0983 at 1155.337 kb on + strand, within Shewana3_0983 at 1155.345 kb on - strand, within Shewana3_0983 at 1155.421 kb on + strand, within Shewana3_0983 at 1156.165 kb on - strand, within Shewana3_0984 at 1156.268 kb on - strand, within Shewana3_0984 at 1156.300 kb on - strand, within Shewana3_0984 at 1156.340 kb on + strand, within Shewana3_0984 at 1156.404 kb on + strand, within Shewana3_0984 at 1156.414 kb on - strand, within Shewana3_0984 at 1156.424 kb on - strand, within Shewana3_0984 at 1156.494 kb on + strand, within Shewana3_0984 at 1156.581 kb on + strand, within Shewana3_0984 at 1156.594 kb on - strand, within Shewana3_0984 at 1156.717 kb on + strand, within Shewana3_0984 at 1156.759 kb on + strand, within Shewana3_0984 at 1156.906 kb on + strand, within Shewana3_0984 at 1156.914 kb on - strand, within Shewana3_0984
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,153,079 + +0.6 1,153,401 - +1.1 1,153,437 - +0.8 1,153,465 + -1.8 1,153,835 - -1.9 1,154,149 - Shewana3_0983 0.17 -0.6 1,154,347 + Shewana3_0983 0.26 +0.5 1,154,432 + Shewana3_0983 0.30 +0.7 1,154,587 + Shewana3_0983 0.37 -1.8 1,154,741 - Shewana3_0983 0.44 +0.9 1,155,036 + Shewana3_0983 0.57 +0.6 1,155,084 - Shewana3_0983 0.60 +0.6 1,155,193 - Shewana3_0983 0.65 +0.1 1,155,337 + Shewana3_0983 0.71 +0.0 1,155,345 - Shewana3_0983 0.72 -1.4 1,155,421 + Shewana3_0983 0.75 +0.6 1,156,165 - Shewana3_0984 0.18 -3.3 1,156,268 - Shewana3_0984 0.26 +0.7 1,156,300 - Shewana3_0984 0.29 -0.8 1,156,340 + Shewana3_0984 0.32 +0.2 1,156,404 + Shewana3_0984 0.38 +0.2 1,156,414 - Shewana3_0984 0.39 -1.5 1,156,424 - Shewana3_0984 0.39 -1.5 1,156,494 + Shewana3_0984 0.45 +1.2 1,156,581 + Shewana3_0984 0.52 +0.8 1,156,594 - Shewana3_0984 0.53 -1.4 1,156,717 + Shewana3_0984 0.64 -1.9 1,156,759 + Shewana3_0984 0.67 -0.5 1,156,906 + Shewana3_0984 0.79 +0.6 1,156,914 - Shewana3_0984 0.80 +0.7
Or see this region's nucleotide sequence