Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0891

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmdoD and Shewana3_0890 are separated by 87 nucleotidesShewana3_0890 and Shewana3_0891 are separated by 20 nucleotidesShewana3_0891 and Shewana3_0892 are separated by 247 nucleotides Shewana3_0889: mdoD - glucan biosynthesis protein D (RefSeq), at 1,034,901 to 1,036,577 mdoD Shewana3_0890: Shewana3_0890 - glutamine amidotransferase (RefSeq), at 1,036,665 to 1,037,381 _0890 Shewana3_0891: Shewana3_0891 - AraC family transcriptional regulator (RefSeq), at 1,037,402 to 1,038,280 _0891 Shewana3_0892: Shewana3_0892 - phosphate transporter (RefSeq), at 1,038,528 to 1,039,997 _0892 Position (kb) 1037 1038 1039Strain fitness (log2 ratio) -2 -1 0 1at 1036.419 kb on + strandat 1036.505 kb on + strandat 1036.579 kb on + strandat 1036.656 kb on + strandat 1036.664 kb on - strandat 1036.751 kb on + strand, within Shewana3_0890at 1036.995 kb on - strand, within Shewana3_0890at 1037.413 kb on - strandat 1037.578 kb on + strand, within Shewana3_0891at 1037.617 kb on + strand, within Shewana3_0891at 1037.644 kb on + strand, within Shewana3_0891at 1037.780 kb on - strand, within Shewana3_0891at 1038.116 kb on + strand, within Shewana3_0891at 1038.158 kb on - strand, within Shewana3_0891at 1038.211 kb on + strandat 1038.366 kb on + strandat 1038.565 kb on - strandat 1038.748 kb on + strand, within Shewana3_0892at 1038.964 kb on + strand, within Shewana3_0892at 1038.964 kb on + strand, within Shewana3_0892at 1038.964 kb on + strand, within Shewana3_0892at 1038.972 kb on - strand, within Shewana3_0892at 1039.076 kb on + strand, within Shewana3_0892at 1039.238 kb on + strand, within Shewana3_0892

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,036,419 + -1.3
1,036,505 + -0.7
1,036,579 + +0.8
1,036,656 + -0.6
1,036,664 - -0.9
1,036,751 + Shewana3_0890 0.12 +0.6
1,036,995 - Shewana3_0890 0.46 +0.7
1,037,413 - +0.4
1,037,578 + Shewana3_0891 0.20 +0.5
1,037,617 + Shewana3_0891 0.24 +1.1
1,037,644 + Shewana3_0891 0.28 +0.5
1,037,780 - Shewana3_0891 0.43 +0.7
1,038,116 + Shewana3_0891 0.81 -0.2
1,038,158 - Shewana3_0891 0.86 +0.6
1,038,211 + +0.2
1,038,366 + -1.9
1,038,565 - +0.6
1,038,748 + Shewana3_0892 0.15 +1.3
1,038,964 + Shewana3_0892 0.30 -2.2
1,038,964 + Shewana3_0892 0.30 +1.1
1,038,964 + Shewana3_0892 0.30 -1.9
1,038,972 - Shewana3_0892 0.30 +0.0
1,039,076 + Shewana3_0892 0.37 -1.2
1,039,238 + Shewana3_0892 0.48 +0.6

Or see this region's nucleotide sequence