Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0794

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0792 and Shewana3_0793 are separated by 7 nucleotidesShewana3_0793 and Shewana3_0794 are separated by 250 nucleotidesShewana3_0794 and Shewana3_0795 overlap by 4 nucleotidesShewana3_0795 and Shewana3_0796 are separated by 143 nucleotides Shewana3_0792: Shewana3_0792 - aromatic acid decarboxylase (RefSeq), at 913,115 to 913,774 _0792 Shewana3_0793: Shewana3_0793 - hypoxanthine phosphoribosyltransferase (RefSeq), at 913,782 to 914,312 _0793 Shewana3_0794: Shewana3_0794 - ABC transporter related (RefSeq), at 914,563 to 915,501 _0794 Shewana3_0795: Shewana3_0795 - ABC-2 type transporter (RefSeq), at 915,498 to 916,268 _0795 Shewana3_0796: Shewana3_0796 - hypothetical protein (RefSeq), at 916,412 to 916,915 _0796 Position (kb) 914 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1at 913.977 kb on + strand, within Shewana3_0793at 913.995 kb on + strand, within Shewana3_0793at 913.995 kb on + strand, within Shewana3_0793at 914.474 kb on - strandat 914.561 kb on - strandat 914.711 kb on + strand, within Shewana3_0794at 914.803 kb on - strand, within Shewana3_0794at 914.812 kb on + strand, within Shewana3_0794at 914.813 kb on - strand, within Shewana3_0794at 915.344 kb on + strand, within Shewana3_0794at 915.352 kb on - strand, within Shewana3_0794at 915.352 kb on - strand, within Shewana3_0794at 915.727 kb on - strand, within Shewana3_0795at 915.853 kb on - strand, within Shewana3_0795at 915.910 kb on + strand, within Shewana3_0795at 915.951 kb on - strand, within Shewana3_0795at 915.966 kb on - strand, within Shewana3_0795at 915.966 kb on - strand, within Shewana3_0795at 916.043 kb on - strand, within Shewana3_0795at 916.043 kb on - strand, within Shewana3_0795at 916.099 kb on + strand, within Shewana3_0795at 916.133 kb on + strand, within Shewana3_0795at 916.189 kb on + strand, within Shewana3_0795at 916.222 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.222 kb on - strandat 916.247 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.249 kb on + strandat 916.257 kb on - strandat 916.257 kb on - strandat 916.257 kb on - strandat 916.257 kb on - strandat 916.409 kb on + strandat 916.414 kb on + strandat 916.414 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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913,977 + Shewana3_0793 0.37 -0.8
913,995 + Shewana3_0793 0.40 -0.2
913,995 + Shewana3_0793 0.40 -3.2
914,474 - +0.4
914,561 - +0.6
914,711 + Shewana3_0794 0.16 -1.3
914,803 - Shewana3_0794 0.26 -2.4
914,812 + Shewana3_0794 0.27 -1.7
914,813 - Shewana3_0794 0.27 +0.7
915,344 + Shewana3_0794 0.83 +0.2
915,352 - Shewana3_0794 0.84 +1.0
915,352 - Shewana3_0794 0.84 +0.6
915,727 - Shewana3_0795 0.30 +0.8
915,853 - Shewana3_0795 0.46 -0.7
915,910 + Shewana3_0795 0.53 -0.3
915,951 - Shewana3_0795 0.59 +0.8
915,966 - Shewana3_0795 0.61 +0.7
915,966 - Shewana3_0795 0.61 -1.4
916,043 - Shewana3_0795 0.71 -2.2
916,043 - Shewana3_0795 0.71 +0.1
916,099 + Shewana3_0795 0.78 -1.2
916,133 + Shewana3_0795 0.82 +0.6
916,189 + Shewana3_0795 0.90 -2.1
916,222 - +0.6
916,222 - -0.9
916,222 - -1.7
916,222 - -0.5
916,222 - +0.6
916,247 + +0.3
916,249 + +0.0
916,249 + +0.8
916,249 + -2.0
916,249 + +0.5
916,249 + -1.0
916,257 - +0.3
916,257 - +0.2
916,257 - +0.1
916,257 - -0.7
916,409 + +0.9
916,414 + -1.8
916,414 + +0.4

Or see this region's nucleotide sequence