Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0790

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0789 and Shewana3_0790 are separated by 198 nucleotidesShewana3_0790 and Shewana3_0791 are separated by 168 nucleotides Shewana3_0789: Shewana3_0789 - sterol desaturase family protein (RefSeq), at 909,849 to 910,712 _0789 Shewana3_0790: Shewana3_0790 - hypothetical protein (RefSeq), at 910,911 to 911,546 _0790 Shewana3_0791: Shewana3_0791 - UDP-N-acetylmuramate (RefSeq), at 911,715 to 913,112 _0791 Position (kb) 910 911 912Strain fitness (log2 ratio) -3 -2 -1 0 1at 910.047 kb on + strand, within Shewana3_0789at 910.064 kb on + strand, within Shewana3_0789at 910.120 kb on + strand, within Shewana3_0789at 910.120 kb on + strand, within Shewana3_0789at 910.128 kb on - strand, within Shewana3_0789at 910.138 kb on - strand, within Shewana3_0789at 910.171 kb on - strand, within Shewana3_0789at 910.185 kb on - strand, within Shewana3_0789at 910.259 kb on + strand, within Shewana3_0789at 910.424 kb on - strand, within Shewana3_0789at 910.429 kb on - strand, within Shewana3_0789at 910.579 kb on + strand, within Shewana3_0789at 910.768 kb on - strandat 910.796 kb on - strandat 910.972 kb on - strandat 911.086 kb on + strand, within Shewana3_0790at 911.099 kb on + strand, within Shewana3_0790at 911.181 kb on - strand, within Shewana3_0790at 911.181 kb on - strand, within Shewana3_0790at 911.242 kb on - strand, within Shewana3_0790at 911.407 kb on - strand, within Shewana3_0790at 911.515 kb on + strandat 911.515 kb on + strandat 911.617 kb on - strandat 911.791 kb on + strandat 911.964 kb on + strand, within Shewana3_0791at 911.964 kb on + strand, within Shewana3_0791at 911.964 kb on + strand, within Shewana3_0791at 912.344 kb on + strand, within Shewana3_0791at 912.360 kb on + strand, within Shewana3_0791

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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910,047 + Shewana3_0789 0.23 +0.8
910,064 + Shewana3_0789 0.25 +0.6
910,120 + Shewana3_0789 0.31 +0.6
910,120 + Shewana3_0789 0.31 +0.6
910,128 - Shewana3_0789 0.32 +0.6
910,138 - Shewana3_0789 0.33 -1.6
910,171 - Shewana3_0789 0.37 -1.2
910,185 - Shewana3_0789 0.39 +0.7
910,259 + Shewana3_0789 0.47 +0.5
910,424 - Shewana3_0789 0.67 -1.6
910,429 - Shewana3_0789 0.67 -0.7
910,579 + Shewana3_0789 0.84 -0.0
910,768 - +0.7
910,796 - +0.7
910,972 - -2.9
911,086 + Shewana3_0790 0.28 -2.0
911,099 + Shewana3_0790 0.30 -2.7
911,181 - Shewana3_0790 0.42 +0.4
911,181 - Shewana3_0790 0.42 +0.5
911,242 - Shewana3_0790 0.52 +0.4
911,407 - Shewana3_0790 0.78 +0.4
911,515 + +0.7
911,515 + +0.3
911,617 - -1.7
911,791 + -0.8
911,964 + Shewana3_0791 0.18 -0.7
911,964 + Shewana3_0791 0.18 -3.4
911,964 + Shewana3_0791 0.18 -0.2
912,344 + Shewana3_0791 0.45 -2.0
912,360 + Shewana3_0791 0.46 -0.4

Or see this region's nucleotide sequence