Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0653 and Shewana3_0654 are separated by 54 nucleotides Shewana3_0654 and Shewana3_0655 are separated by 168 nucleotides Shewana3_0655 and Shewana3_0656 are separated by 88 nucleotides
Shewana3_0653: Shewana3_0653 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 772,874 to 773,989
_0653
Shewana3_0654: Shewana3_0654 - Mg2 transporter protein, CorA family protein (RefSeq), at 774,044 to 775,021
_0654
Shewana3_0655: Shewana3_0655 - hypothetical protein (RefSeq), at 775,190 to 775,564
_0655
Shewana3_0656: Shewana3_0656 - two component LuxR family transcriptional regulator (RefSeq), at 775,653 to 776,282
_0656
Position (kb)
774
775
776 Strain fitness (log2 ratio)
-2
-1
0
1 at 773.112 kb on + strand, within Shewana3_0653 at 773.262 kb on - strand, within Shewana3_0653 at 773.354 kb on + strand, within Shewana3_0653 at 773.355 kb on - strand, within Shewana3_0653 at 773.429 kb on + strand, within Shewana3_0653 at 773.526 kb on - strand, within Shewana3_0653 at 773.595 kb on + strand, within Shewana3_0653 at 773.733 kb on + strand, within Shewana3_0653 at 773.784 kb on - strand, within Shewana3_0653 at 773.859 kb on - strand, within Shewana3_0653 at 773.948 kb on - strand at 773.950 kb on + strand at 774.743 kb on - strand, within Shewana3_0654 at 774.758 kb on + strand, within Shewana3_0654 at 774.854 kb on + strand, within Shewana3_0654 at 774.948 kb on - strand at 774.948 kb on - strand at 774.955 kb on - strand at 774.979 kb on + strand at 774.982 kb on - strand at 774.987 kb on - strand at 775.102 kb on + strand at 775.207 kb on + strand at 775.237 kb on - strand, within Shewana3_0655 at 775.239 kb on + strand, within Shewana3_0655 at 775.262 kb on - strand, within Shewana3_0655 at 775.273 kb on - strand, within Shewana3_0655 at 775.386 kb on + strand, within Shewana3_0655 at 775.537 kb on + strand at 775.537 kb on + strand at 775.758 kb on - strand, within Shewana3_0656
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 773,112 + Shewana3_0653 0.21 -0.9 773,262 - Shewana3_0653 0.35 +0.6 773,354 + Shewana3_0653 0.43 -0.3 773,355 - Shewana3_0653 0.43 -0.5 773,429 + Shewana3_0653 0.50 -0.6 773,526 - Shewana3_0653 0.58 -1.2 773,595 + Shewana3_0653 0.65 -1.7 773,733 + Shewana3_0653 0.77 -1.8 773,784 - Shewana3_0653 0.82 +0.8 773,859 - Shewana3_0653 0.88 -2.0 773,948 - -1.7 773,950 + -0.1 774,743 - Shewana3_0654 0.71 -1.3 774,758 + Shewana3_0654 0.73 +0.7 774,854 + Shewana3_0654 0.83 +0.3 774,948 - -1.7 774,948 - +0.7 774,955 - +0.5 774,979 + +1.0 774,982 - +1.0 774,987 - -2.0 775,102 + +0.7 775,207 + +0.9 775,237 - Shewana3_0655 0.13 +0.0 775,239 + Shewana3_0655 0.13 +0.3 775,262 - Shewana3_0655 0.19 +0.8 775,273 - Shewana3_0655 0.22 -1.5 775,386 + Shewana3_0655 0.52 -1.0 775,537 + +0.4 775,537 + -0.0 775,758 - Shewana3_0656 0.17 +0.4
Or see this region's nucleotide sequence