Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0654

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0653 and Shewana3_0654 are separated by 54 nucleotidesShewana3_0654 and Shewana3_0655 are separated by 168 nucleotidesShewana3_0655 and Shewana3_0656 are separated by 88 nucleotides Shewana3_0653: Shewana3_0653 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 772,874 to 773,989 _0653 Shewana3_0654: Shewana3_0654 - Mg2 transporter protein, CorA family protein (RefSeq), at 774,044 to 775,021 _0654 Shewana3_0655: Shewana3_0655 - hypothetical protein (RefSeq), at 775,190 to 775,564 _0655 Shewana3_0656: Shewana3_0656 - two component LuxR family transcriptional regulator (RefSeq), at 775,653 to 776,282 _0656 Position (kb) 774 775 776Strain fitness (log2 ratio) -2 -1 0 1at 773.112 kb on + strand, within Shewana3_0653at 773.262 kb on - strand, within Shewana3_0653at 773.354 kb on + strand, within Shewana3_0653at 773.355 kb on - strand, within Shewana3_0653at 773.429 kb on + strand, within Shewana3_0653at 773.526 kb on - strand, within Shewana3_0653at 773.595 kb on + strand, within Shewana3_0653at 773.733 kb on + strand, within Shewana3_0653at 773.784 kb on - strand, within Shewana3_0653at 773.859 kb on - strand, within Shewana3_0653at 773.948 kb on - strandat 773.950 kb on + strandat 774.743 kb on - strand, within Shewana3_0654at 774.758 kb on + strand, within Shewana3_0654at 774.854 kb on + strand, within Shewana3_0654at 774.948 kb on - strandat 774.948 kb on - strandat 774.955 kb on - strandat 774.979 kb on + strandat 774.982 kb on - strandat 774.987 kb on - strandat 775.102 kb on + strandat 775.207 kb on + strandat 775.237 kb on - strand, within Shewana3_0655at 775.239 kb on + strand, within Shewana3_0655at 775.262 kb on - strand, within Shewana3_0655at 775.273 kb on - strand, within Shewana3_0655at 775.386 kb on + strand, within Shewana3_0655at 775.537 kb on + strandat 775.537 kb on + strandat 775.758 kb on - strand, within Shewana3_0656

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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773,112 + Shewana3_0653 0.21 -0.9
773,262 - Shewana3_0653 0.35 +0.6
773,354 + Shewana3_0653 0.43 -0.3
773,355 - Shewana3_0653 0.43 -0.5
773,429 + Shewana3_0653 0.50 -0.6
773,526 - Shewana3_0653 0.58 -1.2
773,595 + Shewana3_0653 0.65 -1.7
773,733 + Shewana3_0653 0.77 -1.8
773,784 - Shewana3_0653 0.82 +0.8
773,859 - Shewana3_0653 0.88 -2.0
773,948 - -1.7
773,950 + -0.1
774,743 - Shewana3_0654 0.71 -1.3
774,758 + Shewana3_0654 0.73 +0.7
774,854 + Shewana3_0654 0.83 +0.3
774,948 - -1.7
774,948 - +0.7
774,955 - +0.5
774,979 + +1.0
774,982 - +1.0
774,987 - -2.0
775,102 + +0.7
775,207 + +0.9
775,237 - Shewana3_0655 0.13 +0.0
775,239 + Shewana3_0655 0.13 +0.3
775,262 - Shewana3_0655 0.19 +0.8
775,273 - Shewana3_0655 0.22 -1.5
775,386 + Shewana3_0655 0.52 -1.0
775,537 + +0.4
775,537 + -0.0
775,758 - Shewana3_0656 0.17 +0.4

Or see this region's nucleotide sequence