Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0062

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0061 and Shewana3_0062 are separated by 134 nucleotidesShewana3_0062 and Shewana3_0063 are separated by 99 nucleotidesShewana3_0063 and Shewana3_0064 are separated by 24 nucleotides Shewana3_0061: Shewana3_0061 - pirin domain-containing protein (RefSeq), at 71,895 to 72,821 _0061 Shewana3_0062: Shewana3_0062 - hypothetical protein (RefSeq), at 72,956 to 73,693 _0062 Shewana3_0063: Shewana3_0063 - NLP/P60 protein (RefSeq), at 73,793 to 74,272 _0063 Shewana3_0064: Shewana3_0064 - major facilitator transporter (RefSeq), at 74,297 to 75,745 _0064 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1at 72.209 kb on + strand, within Shewana3_0061at 72.217 kb on - strand, within Shewana3_0061at 72.276 kb on + strand, within Shewana3_0061at 72.420 kb on - strand, within Shewana3_0061at 72.426 kb on + strand, within Shewana3_0061at 72.506 kb on - strand, within Shewana3_0061at 72.551 kb on - strand, within Shewana3_0061at 72.551 kb on - strand, within Shewana3_0061at 72.579 kb on - strand, within Shewana3_0061at 72.632 kb on - strand, within Shewana3_0061at 72.846 kb on - strandat 72.928 kb on - strandat 73.158 kb on + strand, within Shewana3_0062at 73.159 kb on + strand, within Shewana3_0062at 73.270 kb on - strand, within Shewana3_0062at 73.312 kb on - strand, within Shewana3_0062at 73.458 kb on - strand, within Shewana3_0062at 73.573 kb on - strand, within Shewana3_0062at 73.693 kb on + strandat 73.797 kb on + strandat 73.843 kb on - strand, within Shewana3_0063at 73.870 kb on + strand, within Shewana3_0063at 73.870 kb on + strand, within Shewana3_0063at 73.899 kb on - strand, within Shewana3_0063at 74.035 kb on + strand, within Shewana3_0063at 74.112 kb on - strand, within Shewana3_0063at 74.285 kb on + strandat 74.293 kb on - strandat 74.301 kb on - strandat 74.330 kb on + strandat 74.481 kb on + strand, within Shewana3_0064at 74.573 kb on - strand, within Shewana3_0064

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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72,209 + Shewana3_0061 0.34 -1.3
72,217 - Shewana3_0061 0.35 +0.6
72,276 + Shewana3_0061 0.41 +0.0
72,420 - Shewana3_0061 0.57 -1.8
72,426 + Shewana3_0061 0.57 +0.6
72,506 - Shewana3_0061 0.66 +0.4
72,551 - Shewana3_0061 0.71 +1.1
72,551 - Shewana3_0061 0.71 +0.6
72,579 - Shewana3_0061 0.74 +0.5
72,632 - Shewana3_0061 0.80 +0.5
72,846 - +0.4
72,928 - -1.5
73,158 + Shewana3_0062 0.27 +0.3
73,159 + Shewana3_0062 0.28 +0.3
73,270 - Shewana3_0062 0.43 -0.2
73,312 - Shewana3_0062 0.48 -1.4
73,458 - Shewana3_0062 0.68 -1.8
73,573 - Shewana3_0062 0.84 -1.5
73,693 + +0.3
73,797 + +0.7
73,843 - Shewana3_0063 0.10 -2.5
73,870 + Shewana3_0063 0.16 -1.6
73,870 + Shewana3_0063 0.16 -0.1
73,899 - Shewana3_0063 0.22 -2.2
74,035 + Shewana3_0063 0.50 -0.2
74,112 - Shewana3_0063 0.66 +0.2
74,285 + -0.2
74,293 - +0.2
74,301 - +0.3
74,330 + -0.1
74,481 + Shewana3_0064 0.13 +0.8
74,573 - Shewana3_0064 0.19 -1.3

Or see this region's nucleotide sequence