Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4286

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4284 and Shewana3_4285 are separated by 274 nucleotidesShewana3_4285 and Shewana3_4286 are separated by 136 nucleotidesShewana3_4286 and Shewana3_4287 overlap by 4 nucleotides Shewana3_4284: Shewana3_4284 - integrase catalytic subunit (RefSeq), at 167,962 to 168,783 _4284 Shewana3_4285: Shewana3_4285 - hypothetical protein (RefSeq), at 169,058 to 169,498 _4285 Shewana3_4286: Shewana3_4286 - hypothetical protein (RefSeq), at 169,635 to 170,150 _4286 Shewana3_4287: Shewana3_4287 - CopA family copper resistance protein (RefSeq), at 170,147 to 172,075 _4287 Position (kb) 169 170 171Strain fitness (log2 ratio) -2 -1 0 1at 168.644 kb on - strand, within Shewana3_4284at 168.693 kb on - strand, within Shewana3_4284at 168.693 kb on - strand, within Shewana3_4284at 168.695 kb on + strand, within Shewana3_4284at 168.810 kb on - strandat 168.887 kb on + strandat 168.913 kb on + strandat 168.913 kb on + strandat 168.966 kb on + strandat 168.973 kb on + strandat 168.973 kb on + strandat 168.973 kb on + strandat 168.981 kb on - strandat 168.981 kb on - strandat 169.098 kb on + strandat 169.276 kb on + strand, within Shewana3_4285at 169.644 kb on + strandat 169.752 kb on - strand, within Shewana3_4286at 169.789 kb on + strand, within Shewana3_4286at 169.864 kb on + strand, within Shewana3_4286at 169.874 kb on + strand, within Shewana3_4286at 170.128 kb on + strandat 170.136 kb on - strandat 170.222 kb on + strandat 170.533 kb on - strand, within Shewana3_4287at 170.698 kb on - strand, within Shewana3_4287at 170.704 kb on - strand, within Shewana3_4287at 170.984 kb on + strand, within Shewana3_4287at 170.985 kb on + strand, within Shewana3_4287at 170.996 kb on + strand, within Shewana3_4287

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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168,644 - Shewana3_4284 0.83 +0.6
168,693 - Shewana3_4284 0.89 +0.7
168,693 - Shewana3_4284 0.89 +0.6
168,695 + Shewana3_4284 0.89 +0.7
168,810 - +0.7
168,887 + +0.6
168,913 + -1.5
168,913 + +0.6
168,966 + +0.2
168,973 + -0.1
168,973 + +0.3
168,973 + +0.3
168,981 - +1.1
168,981 - -0.0
169,098 + +1.1
169,276 + Shewana3_4285 0.49 +1.1
169,644 + -0.6
169,752 - Shewana3_4286 0.23 -1.3
169,789 + Shewana3_4286 0.30 +1.1
169,864 + Shewana3_4286 0.44 +1.0
169,874 + Shewana3_4286 0.46 +0.7
170,128 + -0.1
170,136 - +0.8
170,222 + -0.4
170,533 - Shewana3_4287 0.20 -1.1
170,698 - Shewana3_4287 0.29 -0.6
170,704 - Shewana3_4287 0.29 -2.1
170,984 + Shewana3_4287 0.43 +0.9
170,985 + Shewana3_4287 0.43 +0.6
170,996 + Shewana3_4287 0.44 +0.4

Or see this region's nucleotide sequence