Strain Fitness in Shewanella loihica PV-4 around Shew_2609

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2608 and Shew_2609 are separated by 60 nucleotidesShew_2609 and Shew_2610 overlap by 4 nucleotides Shew_2608: Shew_2608 - inner-membrane translocator (RefSeq), at 3,074,392 to 3,075,465 _2608 Shew_2609: Shew_2609 - inner-membrane translocator (RefSeq), at 3,075,526 to 3,076,419 _2609 Shew_2610: Shew_2610 - AMP-dependent synthetase and ligase (RefSeq), at 3,076,416 to 3,078,383 _2610 Position (kb) 3075 3076 3077Strain fitness (log2 ratio) -2 -1 0 1at 3074.545 kb on + strand, within Shew_2608at 3074.718 kb on - strand, within Shew_2608at 3075.007 kb on - strand, within Shew_2608at 3075.344 kb on + strand, within Shew_2608at 3075.421 kb on - strandat 3075.524 kb on + strandat 3075.611 kb on + strandat 3075.763 kb on + strand, within Shew_2609at 3076.118 kb on - strand, within Shew_2609at 3076.343 kb on + strandat 3076.513 kb on - strandat 3077.239 kb on + strand, within Shew_2610at 3077.384 kb on + strand, within Shew_2610

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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3,074,545 + Shew_2608 0.14 -0.6
3,074,718 - Shew_2608 0.30 +1.6
3,075,007 - Shew_2608 0.57 -0.1
3,075,344 + Shew_2608 0.89 -0.1
3,075,421 - +1.0
3,075,524 + +0.4
3,075,611 + +0.7
3,075,763 + Shew_2609 0.27 -1.9
3,076,118 - Shew_2609 0.66 -0.3
3,076,343 + +0.7
3,076,513 - +0.8
3,077,239 + Shew_2610 0.42 -0.6
3,077,384 + Shew_2610 0.49 +0.5

Or see this region's nucleotide sequence