Strain Fitness in Shewanella loihica PV-4 around Shew_2008

Experiment: Paraquat dichloride 10 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2007 and Shew_2008 are separated by 81 nucleotidesShew_2008 and Shew_2009 are separated by 236 nucleotides Shew_2007: Shew_2007 - hypothetical protein (RefSeq), at 2,319,294 to 2,320,373 _2007 Shew_2008: Shew_2008 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,320,455 to 2,321,150 _2008 Shew_2009: Shew_2009 - hypothetical protein (RefSeq), at 2,321,387 to 2,322,466 _2009 Position (kb) 2320 2321 2322Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2320.736 kb on + strand, within Shew_2008at 2320.744 kb on - strand, within Shew_2008at 2321.100 kb on + strandat 2321.174 kb on - strandat 2321.911 kb on + strand, within Shew_2009

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
remove
2,320,736 + Shew_2008 0.40 -2.0
2,320,744 - Shew_2008 0.42 -3.5
2,321,100 + -0.1
2,321,174 - +2.9
2,321,911 + Shew_2009 0.49 -0.9

Or see this region's nucleotide sequence