Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0568 and Shew_0569 are separated by 2 nucleotides Shew_0569 and Shew_0570 are separated by 334 nucleotides Shew_0570 and Shew_0571 overlap by 1 nucleotides
Shew_0568: Shew_0568 - HflK protein (RefSeq), at 643,813 to 644,955
_0568
Shew_0569: Shew_0569 - HflC protein (RefSeq), at 644,958 to 645,836
_0569
Shew_0570: Shew_0570 - ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq), at 646,171 to 646,761
_0570
Shew_0571: Shew_0571 - cytochrome b/b6 domain-containing protein (RefSeq), at 646,761 to 647,975
_0571
Position (kb) 644
645
646 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 643.981 kb on + strand, within Shew_0568 at 644.378 kb on + strand, within Shew_0568 at 644.606 kb on + strand, within Shew_0568 at 644.606 kb on + strand, within Shew_0568 at 645.527 kb on + strand, within Shew_0569 at 645.680 kb on + strand, within Shew_0569 at 645.766 kb on + strand at 645.766 kb on + strand at 645.766 kb on + strand at 645.772 kb on + strand at 646.601 kb on - strand, within Shew_0570 at 646.783 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 643,981 + Shew_0568 0.15 -5.4 644,378 + Shew_0568 0.49 -6.6 644,606 + Shew_0568 0.69 -3.2 644,606 + Shew_0568 0.69 -6.2 645,527 + Shew_0569 0.65 -3.0 645,680 + Shew_0569 0.82 -4.2 645,766 + -5.1 645,766 + -3.9 645,766 + -5.2 645,772 + -4.1 646,601 - Shew_0570 0.73 +2.8 646,783 + +0.8
Or see this region's nucleotide sequence