Strain Fitness in Shewanella loihica PV-4 around Shew_0566

Experiment: Paraquat dichloride 10 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_0565 and Shew_0566 are separated by 92 nucleotidesShew_0566 and Shew_0567 are separated by 20 nucleotides Shew_0565: Shew_0565 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 641,153 to 642,079 _0565 Shew_0566: Shew_0566 - RNA chaperone Hfq (RefSeq), at 642,172 to 642,450 _0566 Shew_0567: Shew_0567 - GTP-binding protein, HSR1-related (RefSeq), at 642,471 to 643,769 _0567 Position (kb) 642 643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 641.242 kb on + strandat 641.590 kb on + strand, within Shew_0565at 641.717 kb on + strand, within Shew_0565at 641.768 kb on + strand, within Shew_0565at 641.768 kb on + strand, within Shew_0565at 641.987 kb on + strandat 642.371 kb on + strand, within Shew_0566at 642.499 kb on + strandat 642.504 kb on + strandat 642.538 kb on + strandat 642.839 kb on + strand, within Shew_0567at 643.324 kb on + strand, within Shew_0567

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
remove
641,242 + -3.7
641,590 + Shew_0565 0.47 -1.2
641,717 + Shew_0565 0.61 -3.0
641,768 + Shew_0565 0.66 -1.8
641,768 + Shew_0565 0.66 -2.5
641,987 + -1.2
642,371 + Shew_0566 0.71 -4.1
642,499 + -2.4
642,504 + -4.6
642,538 + -4.0
642,839 + Shew_0567 0.28 -3.5
643,324 + Shew_0567 0.66 -4.6

Or see this region's nucleotide sequence