Strain Fitness in Shewanella loihica PV-4 around Shew_R0022

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0559 and Shew_R0019 are separated by 186 nucleotidesShew_R0019 and Shew_R0020 are separated by 45 nucleotidesShew_R0020 and Shew_R0021 are separated by 7 nucleotidesShew_R0021 and Shew_R0022 are separated by 8 nucleotidesShew_R0022 and Shew_0560 are separated by 700 nucleotides Shew_0559: Shew_0559 - oligoribonuclease (RefSeq), at 633,209 to 633,754 _0559 Shew_R0019: Shew_R0019 - tRNA-Gly (RefSeq), at 633,941 to 634,016 _R0019 Shew_R0020: Shew_R0020 - tRNA-Gly (RefSeq), at 634,062 to 634,137 _R0020 Shew_R0021: Shew_R0021 - tRNA-Gly (RefSeq), at 634,145 to 634,220 _R0021 Shew_R0022: Shew_R0022 - tRNA-Gly (RefSeq), at 634,229 to 634,304 _R0022 Shew_0560: Shew_0560 - hypothetical protein (RefSeq), at 635,005 to 635,460 _0560 Position (kb) 634 635Strain fitness (log2 ratio) -1 0 1at 634.535 kb on + strandat 634.891 kb on + strandat 635.031 kb on + strandat 635.049 kb on - strandat 635.088 kb on - strand, within Shew_0560at 635.090 kb on + strand, within Shew_0560at 635.090 kb on + strand, within Shew_0560at 635.098 kb on - strand, within Shew_0560

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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634,535 + +1.0
634,891 + -0.1
635,031 + +0.4
635,049 - +0.1
635,088 - Shew_0560 0.18 +0.6
635,090 + Shew_0560 0.19 -0.2
635,090 + Shew_0560 0.19 +0.2
635,098 - Shew_0560 0.20 +1.6

Or see this region's nucleotide sequence