Strain Fitness in Shewanella loihica PV-4 around Shew_0247

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0246 and Shew_0247 are separated by 306 nucleotidesShew_0247 and Shew_0248 are separated by 44 nucleotides Shew_0246: Shew_0246 - hypothetical protein (RefSeq), at 265,675 to 266,292 _0246 Shew_0247: Shew_0247 - hypothetical protein (RefSeq), at 266,599 to 266,994 _0247 Shew_0248: Shew_0248 - GCN5-related N-acetyltransferase (RefSeq), at 267,039 to 267,596 _0248 Position (kb) 266 267Strain fitness (log2 ratio) -1 0 1at 265.755 kb on - strand, within Shew_0246at 265.988 kb on + strand, within Shew_0246at 266.568 kb on + strandat 266.576 kb on - strandat 266.616 kb on + strandat 266.688 kb on + strand, within Shew_0247at 266.885 kb on + strand, within Shew_0247at 266.893 kb on - strand, within Shew_0247at 266.893 kb on - strand, within Shew_0247at 267.192 kb on - strand, within Shew_0248at 267.285 kb on - strand, within Shew_0248at 267.287 kb on + strand, within Shew_0248at 267.295 kb on - strand, within Shew_0248at 267.295 kb on - strand, within Shew_0248at 267.369 kb on + strand, within Shew_0248at 267.371 kb on - strand, within Shew_0248at 267.418 kb on + strand, within Shew_0248at 267.592 kb on - strandat 267.607 kb on - strandat 267.913 kb on + strandat 267.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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265,755 - Shew_0246 0.13 +0.3
265,988 + Shew_0246 0.51 +0.4
266,568 + +0.1
266,576 - -0.1
266,616 + -0.2
266,688 + Shew_0247 0.22 -0.2
266,885 + Shew_0247 0.72 -1.5
266,893 - Shew_0247 0.74 -0.4
266,893 - Shew_0247 0.74 +0.0
267,192 - Shew_0248 0.27 -0.8
267,285 - Shew_0248 0.44 +0.3
267,287 + Shew_0248 0.44 +1.3
267,295 - Shew_0248 0.46 -0.2
267,295 - Shew_0248 0.46 +0.2
267,369 + Shew_0248 0.59 +0.9
267,371 - Shew_0248 0.59 -1.3
267,418 + Shew_0248 0.68 +0.3
267,592 - +0.7
267,607 - -0.8
267,913 + -0.1
267,932 - -0.7

Or see this region's nucleotide sequence