Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0237 and Shew_0238 are separated by 75 nucleotides Shew_0238 and Shew_0239 are separated by 138 nucleotides
Shew_0237: Shew_0237 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 252,445 to 254,343
_0237
Shew_0238: Shew_0238 - porin (RefSeq), at 254,419 to 255,507
_0238
Shew_0239: Shew_0239 - formate dehydrogenase, gamma subunit (RefSeq), at 255,646 to 256,626
_0239
Position (kb) 254
255
256 Strain fitness (log2 ratio) -1
0
1
2 at 253.444 kb on + strand, within Shew_0237 at 253.539 kb on + strand, within Shew_0237 at 253.588 kb on - strand, within Shew_0237 at 253.720 kb on - strand, within Shew_0237 at 253.901 kb on + strand, within Shew_0237 at 253.934 kb on + strand, within Shew_0237 at 254.074 kb on - strand, within Shew_0237 at 254.226 kb on + strand at 254.378 kb on + strand at 254.383 kb on + strand at 254.401 kb on - strand at 254.401 kb on - strand at 254.612 kb on + strand, within Shew_0238 at 254.661 kb on - strand, within Shew_0238 at 254.778 kb on - strand, within Shew_0238 at 254.782 kb on + strand, within Shew_0238 at 254.825 kb on - strand, within Shew_0238 at 254.859 kb on + strand, within Shew_0238 at 254.869 kb on + strand, within Shew_0238 at 255.431 kb on + strand at 255.436 kb on + strand at 255.581 kb on - strand at 255.727 kb on + strand at 255.791 kb on + strand, within Shew_0239 at 255.905 kb on + strand, within Shew_0239 at 255.924 kb on + strand, within Shew_0239 at 256.098 kb on - strand, within Shew_0239 at 256.169 kb on + strand, within Shew_0239 at 256.379 kb on - strand, within Shew_0239
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 253,444 + Shew_0237 0.53 +0.0 253,539 + Shew_0237 0.58 +2.5 253,588 - Shew_0237 0.60 +0.0 253,720 - Shew_0237 0.67 +0.7 253,901 + Shew_0237 0.77 -0.3 253,934 + Shew_0237 0.78 +0.1 254,074 - Shew_0237 0.86 +0.8 254,226 + +0.1 254,378 + -0.4 254,383 + +0.5 254,401 - +0.2 254,401 - +0.4 254,612 + Shew_0238 0.18 +0.4 254,661 - Shew_0238 0.22 +0.7 254,778 - Shew_0238 0.33 +0.4 254,782 + Shew_0238 0.33 +0.2 254,825 - Shew_0238 0.37 +0.2 254,859 + Shew_0238 0.40 +1.6 254,869 + Shew_0238 0.41 +0.4 255,431 + -0.2 255,436 + +1.4 255,581 - -0.1 255,727 + -0.0 255,791 + Shew_0239 0.15 +0.2 255,905 + Shew_0239 0.26 +0.6 255,924 + Shew_0239 0.28 +0.2 256,098 - Shew_0239 0.46 +0.5 256,169 + Shew_0239 0.53 +0.8 256,379 - Shew_0239 0.75 +0.2
Or see this region's nucleotide sequence