Strain Fitness in Shewanella loihica PV-4 around Shew_0104

Experiment: Paraquat dichloride 10 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0103 and Shew_0104 are separated by 52 nucleotidesShew_0104 and Shew_0105 are separated by 75 nucleotides Shew_0103: Shew_0103 - sodium/glutamate symporter (RefSeq), at 112,185 to 113,408 _0103 Shew_0104: Shew_0104 - hypothetical protein (RefSeq), at 113,461 to 113,712 _0104 Shew_0105: Shew_0105 - peptidase M14, carboxypeptidase A (RefSeq), at 113,788 to 116,325 _0105 Position (kb) 113 114Strain fitness (log2 ratio) -2 -1 0 1at 113.001 kb on - strand, within Shew_0103at 113.193 kb on - strand, within Shew_0103at 113.321 kb on - strandat 113.688 kb on + strandat 113.698 kb on - strandat 113.821 kb on + strandat 113.936 kb on - strandat 114.073 kb on - strand, within Shew_0105at 114.378 kb on + strand, within Shew_0105at 114.535 kb on + strand, within Shew_0105at 114.543 kb on - strand, within Shew_0105at 114.664 kb on - strand, within Shew_0105at 114.679 kb on - strand, within Shew_0105

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml
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113,001 - Shew_0103 0.67 +0.5
113,193 - Shew_0103 0.82 -2.1
113,321 - +1.1
113,688 + -0.0
113,698 - +0.2
113,821 + +0.1
113,936 - +0.1
114,073 - Shew_0105 0.11 +0.5
114,378 + Shew_0105 0.23 -1.2
114,535 + Shew_0105 0.29 -0.1
114,543 - Shew_0105 0.30 +0.3
114,664 - Shew_0105 0.35 +1.1
114,679 - Shew_0105 0.35 +0.2

Or see this region's nucleotide sequence