Experiment: Paraquat dichloride 10 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0073 and Shew_0074 are separated by 99 nucleotides Shew_0074 and Shew_0075 overlap by 4 nucleotides Shew_0075 and Shew_0076 are separated by 292 nucleotides Shew_0076 and Shew_0077 are separated by 21 nucleotides
Shew_0073: Shew_0073 - coproporphyrinogen III oxidase (RefSeq), at 86,819 to 88,162
_0073
Shew_0074: Shew_0074 - no description, at 88,262 to 88,885
_0074
Shew_0075: Shew_0075 - hypothetical protein (RefSeq), at 88,882 to 89,097
_0075
Shew_0076: Shew_0076 - antibiotic biosynthesis monooxygenase (RefSeq), at 89,390 to 89,677
_0076
Shew_0077: Shew_0077 - GCN5-related N-acetyltransferase (RefSeq), at 89,699 to 90,652
_0077
Position (kb) 88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 87.296 kb on - strand, within Shew_0073 at 87.296 kb on - strand, within Shew_0073 at 87.302 kb on - strand, within Shew_0073 at 87.608 kb on + strand, within Shew_0073 at 87.641 kb on + strand, within Shew_0073 at 87.801 kb on + strand, within Shew_0073 at 88.106 kb on + strand at 88.114 kb on - strand at 88.122 kb on + strand at 88.167 kb on + strand at 88.526 kb on + strand, within Shew_0074 at 88.665 kb on + strand, within Shew_0074 at 88.665 kb on + strand, within Shew_0074 at 88.673 kb on - strand, within Shew_0074 at 88.673 kb on - strand, within Shew_0074 at 88.673 kb on - strand, within Shew_0074 at 88.673 kb on - strand, within Shew_0074 at 88.755 kb on + strand, within Shew_0074 at 88.847 kb on + strand at 89.081 kb on - strand at 89.113 kb on - strand at 89.291 kb on + strand at 89.299 kb on - strand at 89.531 kb on + strand, within Shew_0076 at 89.567 kb on + strand, within Shew_0076 at 89.572 kb on + strand, within Shew_0076 at 89.671 kb on + strand at 89.671 kb on + strand at 89.671 kb on + strand at 89.840 kb on - strand, within Shew_0077
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 10 mg/ml remove 87,296 - Shew_0073 0.35 +0.1 87,296 - Shew_0073 0.35 +0.4 87,302 - Shew_0073 0.36 +0.7 87,608 + Shew_0073 0.59 -0.2 87,641 + Shew_0073 0.61 +0.6 87,801 + Shew_0073 0.73 +0.2 88,106 + +0.3 88,114 - -0.0 88,122 + +0.1 88,167 + +0.3 88,526 + Shew_0074 0.42 +0.1 88,665 + Shew_0074 0.65 -0.6 88,665 + Shew_0074 0.65 -0.1 88,673 - Shew_0074 0.66 +0.1 88,673 - Shew_0074 0.66 +1.4 88,673 - Shew_0074 0.66 -0.6 88,673 - Shew_0074 0.66 -0.4 88,755 + Shew_0074 0.79 -2.8 88,847 + +0.5 89,081 - +0.0 89,113 - +0.8 89,291 + +0.5 89,299 - +0.2 89,531 + Shew_0076 0.49 +0.1 89,567 + Shew_0076 0.61 +0.1 89,572 + Shew_0076 0.63 +0.2 89,671 + +0.1 89,671 + +0.9 89,671 + -0.2 89,840 - Shew_0077 0.15 -0.2
Or see this region's nucleotide sequence