Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5836

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5835 and Pf6N2E2_5836 overlap by 11 nucleotidesPf6N2E2_5836 and Pf6N2E2_5837 are separated by 88 nucleotides Pf6N2E2_5835 - Pyruvate kinase (EC 2.7.1.40), at 6,651,588 to 6,653,003 _5835 Pf6N2E2_5836 - D-glycerate 2-kinase (EC 2.7.1.-), at 6,652,993 to 6,654,273 _5836 Pf6N2E2_5837 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 6,654,362 to 6,655,252 _5837 Position (kb) 6652 6653 6654 6655Strain fitness (log2 ratio) -2 -1 0 1at 6652.923 kb on + strandat 6652.924 kb on - strandat 6653.096 kb on + strandat 6653.096 kb on + strandat 6653.237 kb on + strand, within Pf6N2E2_5836at 6653.237 kb on + strand, within Pf6N2E2_5836at 6653.237 kb on + strand, within Pf6N2E2_5836at 6653.237 kb on + strand, within Pf6N2E2_5836at 6653.237 kb on + strand, within Pf6N2E2_5836at 6653.238 kb on - strand, within Pf6N2E2_5836at 6653.238 kb on - strand, within Pf6N2E2_5836at 6653.733 kb on - strand, within Pf6N2E2_5836at 6653.733 kb on - strand, within Pf6N2E2_5836at 6653.733 kb on - strand, within Pf6N2E2_5836at 6653.738 kb on + strand, within Pf6N2E2_5836at 6653.738 kb on + strand, within Pf6N2E2_5836at 6653.738 kb on + strand, within Pf6N2E2_5836at 6653.738 kb on + strand, within Pf6N2E2_5836at 6653.738 kb on + strand, within Pf6N2E2_5836at 6653.738 kb on + strand, within Pf6N2E2_5836at 6653.738 kb on + strand, within Pf6N2E2_5836at 6653.739 kb on - strand, within Pf6N2E2_5836at 6653.739 kb on - strand, within Pf6N2E2_5836at 6653.739 kb on - strand, within Pf6N2E2_5836at 6653.739 kb on - strand, within Pf6N2E2_5836at 6653.739 kb on - strand, within Pf6N2E2_5836at 6653.740 kb on + strand, within Pf6N2E2_5836at 6654.188 kb on + strandat 6654.188 kb on + strandat 6654.188 kb on + strandat 6654.188 kb on + strandat 6654.188 kb on + strandat 6654.188 kb on + strandat 6654.189 kb on - strandat 6654.189 kb on - strandat 6654.292 kb on - strandat 6654.295 kb on - strandat 6654.363 kb on + strandat 6654.363 kb on + strandat 6654.363 kb on + strandat 6654.364 kb on - strandat 6654.364 kb on - strandat 6654.364 kb on - strandat 6654.364 kb on - strandat 6654.364 kb on - strandat 6654.364 kb on - strandat 6654.364 kb on - strandat 6654.364 kb on - strandat 6654.392 kb on - strandat 6654.392 kb on - strandat 6654.481 kb on + strand, within Pf6N2E2_5837at 6655.272 kb on + strandat 6655.272 kb on + strandat 6655.272 kb on + strandat 6655.272 kb on + strandat 6655.273 kb on - strandat 6655.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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6,652,923 + +1.5
6,652,924 - +1.3
6,653,096 + +0.2
6,653,096 + -0.4
6,653,237 + Pf6N2E2_5836 0.19 -0.1
6,653,237 + Pf6N2E2_5836 0.19 -0.0
6,653,237 + Pf6N2E2_5836 0.19 +0.6
6,653,237 + Pf6N2E2_5836 0.19 -0.8
6,653,237 + Pf6N2E2_5836 0.19 +0.1
6,653,238 - Pf6N2E2_5836 0.19 +0.5
6,653,238 - Pf6N2E2_5836 0.19 +1.1
6,653,733 - Pf6N2E2_5836 0.58 -0.3
6,653,733 - Pf6N2E2_5836 0.58 -0.2
6,653,733 - Pf6N2E2_5836 0.58 -0.5
6,653,738 + Pf6N2E2_5836 0.58 -1.1
6,653,738 + Pf6N2E2_5836 0.58 -0.1
6,653,738 + Pf6N2E2_5836 0.58 -0.4
6,653,738 + Pf6N2E2_5836 0.58 -0.9
6,653,738 + Pf6N2E2_5836 0.58 -1.8
6,653,738 + Pf6N2E2_5836 0.58 +0.3
6,653,738 + Pf6N2E2_5836 0.58 -0.2
6,653,739 - Pf6N2E2_5836 0.58 +0.3
6,653,739 - Pf6N2E2_5836 0.58 -0.1
6,653,739 - Pf6N2E2_5836 0.58 +0.5
6,653,739 - Pf6N2E2_5836 0.58 -1.4
6,653,739 - Pf6N2E2_5836 0.58 +0.4
6,653,740 + Pf6N2E2_5836 0.58 -0.6
6,654,188 + -1.7
6,654,188 + +0.2
6,654,188 + -0.5
6,654,188 + +0.9
6,654,188 + -0.1
6,654,188 + -0.7
6,654,189 - -0.0
6,654,189 - +0.9
6,654,292 - -1.1
6,654,295 - -0.8
6,654,363 + -0.7
6,654,363 + +0.1
6,654,363 + +1.1
6,654,364 - +0.1
6,654,364 - +1.3
6,654,364 - +0.4
6,654,364 - +0.1
6,654,364 - -2.1
6,654,364 - +0.2
6,654,364 - -0.6
6,654,364 - +0.8
6,654,392 - +0.5
6,654,392 - -0.2
6,654,481 + Pf6N2E2_5837 0.13 -0.9
6,655,272 + -1.3
6,655,272 + +0.4
6,655,272 + -0.7
6,655,272 + +0.1
6,655,273 - +0.7
6,655,273 - +0.1

Or see this region's nucleotide sequence