Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3732

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3731 and Pf6N2E2_3732 are separated by 616 nucleotidesPf6N2E2_3732 and Pf6N2E2_3733 are separated by 172 nucleotides Pf6N2E2_3731 - hypothetical protein, at 4,343,918 to 4,344,439 _3731 Pf6N2E2_3732 - putative hydrolase, at 4,345,056 to 4,345,844 _3732 Pf6N2E2_3733 - hypothetical protein, at 4,346,017 to 4,350,081 _3733 Position (kb) 4345 4346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4344.151 kb on - strand, within Pf6N2E2_3731at 4344.151 kb on - strand, within Pf6N2E2_3731at 4344.151 kb on - strand, within Pf6N2E2_3731at 4344.182 kb on + strand, within Pf6N2E2_3731at 4344.248 kb on - strand, within Pf6N2E2_3731at 4344.280 kb on - strand, within Pf6N2E2_3731at 4344.328 kb on + strand, within Pf6N2E2_3731at 4344.328 kb on + strand, within Pf6N2E2_3731at 4344.329 kb on - strand, within Pf6N2E2_3731at 4344.378 kb on + strand, within Pf6N2E2_3731at 4344.378 kb on + strand, within Pf6N2E2_3731at 4344.378 kb on + strand, within Pf6N2E2_3731at 4344.402 kb on + strandat 4344.435 kb on + strandat 4344.436 kb on - strandat 4344.535 kb on + strandat 4344.535 kb on + strandat 4344.535 kb on + strandat 4344.592 kb on + strandat 4344.789 kb on + strandat 4344.826 kb on - strandat 4344.841 kb on + strandat 4344.841 kb on + strandat 4344.841 kb on + strandat 4344.842 kb on - strandat 4344.919 kb on + strandat 4344.919 kb on + strandat 4344.920 kb on - strandat 4344.952 kb on + strandat 4344.953 kb on - strandat 4344.953 kb on - strandat 4344.953 kb on - strandat 4344.962 kb on + strandat 4344.962 kb on + strandat 4344.962 kb on + strandat 4344.962 kb on + strandat 4344.963 kb on - strandat 4344.970 kb on + strandat 4344.971 kb on - strandat 4344.996 kb on + strandat 4344.996 kb on + strandat 4344.996 kb on + strandat 4344.997 kb on - strandat 4344.997 kb on - strandat 4345.002 kb on + strandat 4345.026 kb on + strandat 4345.026 kb on + strandat 4345.026 kb on + strandat 4345.027 kb on - strandat 4345.031 kb on + strandat 4345.031 kb on + strandat 4345.031 kb on + strandat 4345.031 kb on + strandat 4345.031 kb on + strandat 4345.031 kb on + strandat 4345.031 kb on + strandat 4345.031 kb on + strandat 4345.031 kb on + strandat 4345.031 kb on + strandat 4345.032 kb on - strandat 4345.032 kb on - strandat 4345.032 kb on - strandat 4345.032 kb on - strandat 4345.032 kb on - strandat 4345.032 kb on - strandat 4345.033 kb on + strandat 4345.034 kb on - strandat 4345.103 kb on - strandat 4345.133 kb on + strandat 4345.133 kb on + strandat 4345.134 kb on - strandat 4345.134 kb on - strandat 4345.134 kb on - strandat 4345.134 kb on - strandat 4345.176 kb on - strand, within Pf6N2E2_3732at 4345.197 kb on - strand, within Pf6N2E2_3732at 4345.245 kb on - strand, within Pf6N2E2_3732at 4345.259 kb on + strand, within Pf6N2E2_3732at 4345.259 kb on + strand, within Pf6N2E2_3732at 4345.260 kb on - strand, within Pf6N2E2_3732at 4345.283 kb on - strand, within Pf6N2E2_3732at 4345.331 kb on + strand, within Pf6N2E2_3732at 4345.331 kb on + strand, within Pf6N2E2_3732at 4345.331 kb on + strand, within Pf6N2E2_3732at 4345.332 kb on - strand, within Pf6N2E2_3732at 4345.386 kb on - strand, within Pf6N2E2_3732at 4345.563 kb on + strand, within Pf6N2E2_3732at 4345.564 kb on - strand, within Pf6N2E2_3732at 4345.706 kb on + strand, within Pf6N2E2_3732at 4345.709 kb on - strand, within Pf6N2E2_3732at 4345.730 kb on + strand, within Pf6N2E2_3732at 4345.746 kb on + strand, within Pf6N2E2_3732at 4345.747 kb on - strand, within Pf6N2E2_3732at 4345.754 kb on + strand, within Pf6N2E2_3732at 4345.755 kb on - strand, within Pf6N2E2_3732at 4345.755 kb on - strand, within Pf6N2E2_3732at 4345.755 kb on - strand, within Pf6N2E2_3732at 4345.835 kb on + strandat 4345.899 kb on + strandat 4345.900 kb on - strandat 4345.900 kb on - strandat 4345.904 kb on - strandat 4345.946 kb on - strandat 4345.946 kb on - strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.949 kb on + strandat 4345.950 kb on - strandat 4345.950 kb on - strandat 4345.950 kb on - strandat 4345.950 kb on - strandat 4345.950 kb on - strandat 4345.950 kb on - strandat 4345.950 kb on - strandat 4345.950 kb on - strandat 4345.951 kb on + strandat 4345.951 kb on + strandat 4345.951 kb on + strandat 4345.953 kb on + strandat 4345.953 kb on + strandat 4345.953 kb on + strandat 4345.954 kb on - strandat 4345.954 kb on - strandat 4345.954 kb on - strandat 4345.980 kb on + strandat 4345.980 kb on + strandat 4345.981 kb on - strandat 4345.981 kb on - strandat 4345.981 kb on - strandat 4345.981 kb on - strandat 4345.981 kb on - strandat 4345.981 kb on - strandat 4346.037 kb on - strandat 4346.037 kb on - strandat 4346.060 kb on + strandat 4346.060 kb on + strandat 4346.061 kb on - strandat 4346.061 kb on - strandat 4346.204 kb on + strandat 4346.367 kb on + strandat 4346.367 kb on + strandat 4346.367 kb on + strandat 4346.367 kb on + strandat 4346.367 kb on + strandat 4346.368 kb on - strandat 4346.369 kb on + strandat 4346.369 kb on + strandat 4346.369 kb on + strandat 4346.369 kb on + strandat 4346.369 kb on + strandat 4346.369 kb on + strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.370 kb on - strandat 4346.421 kb on + strandat 4346.421 kb on + strandat 4346.456 kb on + strand, within Pf6N2E2_3733at 4346.456 kb on + strand, within Pf6N2E2_3733at 4346.456 kb on + strand, within Pf6N2E2_3733at 4346.476 kb on + strand, within Pf6N2E2_3733at 4346.722 kb on + strand, within Pf6N2E2_3733at 4346.722 kb on + strand, within Pf6N2E2_3733at 4346.733 kb on + strand, within Pf6N2E2_3733at 4346.733 kb on + strand, within Pf6N2E2_3733at 4346.733 kb on + strand, within Pf6N2E2_3733at 4346.830 kb on + strand, within Pf6N2E2_3733at 4346.830 kb on + strand, within Pf6N2E2_3733at 4346.831 kb on - strand, within Pf6N2E2_3733at 4346.831 kb on - strand, within Pf6N2E2_3733at 4346.831 kb on - strand, within Pf6N2E2_3733

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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4,344,151 - Pf6N2E2_3731 0.45 +0.2
4,344,151 - Pf6N2E2_3731 0.45 +0.2
4,344,151 - Pf6N2E2_3731 0.45 -0.3
4,344,182 + Pf6N2E2_3731 0.51 +0.6
4,344,248 - Pf6N2E2_3731 0.63 -0.2
4,344,280 - Pf6N2E2_3731 0.69 +0.4
4,344,328 + Pf6N2E2_3731 0.79 -0.4
4,344,328 + Pf6N2E2_3731 0.79 +0.9
4,344,329 - Pf6N2E2_3731 0.79 +1.1
4,344,378 + Pf6N2E2_3731 0.88 +0.9
4,344,378 + Pf6N2E2_3731 0.88 -0.2
4,344,378 + Pf6N2E2_3731 0.88 -0.2
4,344,402 + +0.5
4,344,435 + +0.1
4,344,436 - +0.9
4,344,535 + -0.2
4,344,535 + +0.3
4,344,535 + +0.5
4,344,592 + -0.0
4,344,789 + +0.0
4,344,826 - -0.4
4,344,841 + +0.2
4,344,841 + +1.0
4,344,841 + +0.9
4,344,842 - +1.5
4,344,919 + +0.9
4,344,919 + -0.3
4,344,920 - +1.7
4,344,952 + +0.2
4,344,953 - +0.6
4,344,953 - +0.3
4,344,953 - -0.0
4,344,962 + -0.2
4,344,962 + +1.5
4,344,962 + -0.3
4,344,962 + +0.2
4,344,963 - -0.3
4,344,970 + +0.4
4,344,971 - +0.0
4,344,996 + +0.5
4,344,996 + +0.7
4,344,996 + +0.2
4,344,997 - +0.3
4,344,997 - +0.4
4,345,002 + -0.6
4,345,026 + +0.7
4,345,026 + -0.2
4,345,026 + +0.3
4,345,027 - -0.3
4,345,031 + +0.6
4,345,031 + -0.4
4,345,031 + +0.0
4,345,031 + +0.5
4,345,031 + +0.6
4,345,031 + +0.4
4,345,031 + -0.4
4,345,031 + +1.0
4,345,031 + +0.1
4,345,031 + +0.4
4,345,032 - -0.4
4,345,032 - -0.2
4,345,032 - +0.2
4,345,032 - -3.1
4,345,032 - +0.6
4,345,032 - +0.7
4,345,033 + -2.0
4,345,034 - -0.3
4,345,103 - -0.5
4,345,133 + +1.2
4,345,133 + +1.5
4,345,134 - +0.7
4,345,134 - +1.1
4,345,134 - -0.2
4,345,134 - -0.2
4,345,176 - Pf6N2E2_3732 0.15 +0.4
4,345,197 - Pf6N2E2_3732 0.18 +0.3
4,345,245 - Pf6N2E2_3732 0.24 +0.6
4,345,259 + Pf6N2E2_3732 0.26 +0.9
4,345,259 + Pf6N2E2_3732 0.26 +0.0
4,345,260 - Pf6N2E2_3732 0.26 -0.3
4,345,283 - Pf6N2E2_3732 0.29 -0.7
4,345,331 + Pf6N2E2_3732 0.35 +0.5
4,345,331 + Pf6N2E2_3732 0.35 +0.2
4,345,331 + Pf6N2E2_3732 0.35 +1.0
4,345,332 - Pf6N2E2_3732 0.35 -1.4
4,345,386 - Pf6N2E2_3732 0.42 -0.3
4,345,563 + Pf6N2E2_3732 0.64 +0.4
4,345,564 - Pf6N2E2_3732 0.64 +0.1
4,345,706 + Pf6N2E2_3732 0.82 +0.5
4,345,709 - Pf6N2E2_3732 0.83 -0.5
4,345,730 + Pf6N2E2_3732 0.85 +0.1
4,345,746 + Pf6N2E2_3732 0.87 +0.9
4,345,747 - Pf6N2E2_3732 0.88 +1.3
4,345,754 + Pf6N2E2_3732 0.88 +1.9
4,345,755 - Pf6N2E2_3732 0.89 +0.7
4,345,755 - Pf6N2E2_3732 0.89 +0.7
4,345,755 - Pf6N2E2_3732 0.89 +1.1
4,345,835 + +0.3
4,345,899 + -0.3
4,345,900 - +0.3
4,345,900 - +0.1
4,345,904 - +0.1
4,345,946 - +1.8
4,345,946 - +0.2
4,345,949 + +0.3
4,345,949 + +0.8
4,345,949 + -1.6
4,345,949 + +2.1
4,345,949 + +1.0
4,345,949 + +0.1
4,345,949 + +1.2
4,345,949 + +0.9
4,345,949 + +0.4
4,345,949 + +0.7
4,345,949 + +0.1
4,345,949 + -0.1
4,345,949 + +0.3
4,345,949 + +0.2
4,345,949 + -0.3
4,345,949 + +1.1
4,345,950 - -0.3
4,345,950 - +0.6
4,345,950 - -0.3
4,345,950 - +0.5
4,345,950 - +0.7
4,345,950 - -0.4
4,345,950 - +0.2
4,345,950 - +0.3
4,345,951 + -1.5
4,345,951 + +0.5
4,345,951 + +0.7
4,345,953 + +0.7
4,345,953 + +0.4
4,345,953 + +0.6
4,345,954 - +0.0
4,345,954 - +0.5
4,345,954 - +2.0
4,345,980 + -1.0
4,345,980 + -1.0
4,345,981 - +0.2
4,345,981 - -0.4
4,345,981 - -0.3
4,345,981 - +0.6
4,345,981 - -0.6
4,345,981 - -0.0
4,346,037 - +1.0
4,346,037 - +0.5
4,346,060 + +0.2
4,346,060 + +0.1
4,346,061 - -0.4
4,346,061 - -0.4
4,346,204 + +1.1
4,346,367 + +0.4
4,346,367 + +0.2
4,346,367 + +0.2
4,346,367 + +0.5
4,346,367 + -0.1
4,346,368 - -0.1
4,346,369 + +0.4
4,346,369 + +0.4
4,346,369 + -0.8
4,346,369 + +0.2
4,346,369 + -0.3
4,346,369 + +0.4
4,346,370 - +0.6
4,346,370 - +0.5
4,346,370 - +0.3
4,346,370 - +1.3
4,346,370 - +0.2
4,346,370 - +1.4
4,346,370 - -0.2
4,346,370 - +0.7
4,346,370 - +0.0
4,346,370 - +0.5
4,346,370 - +0.3
4,346,370 - -1.3
4,346,421 + +0.2
4,346,421 + +1.0
4,346,456 + Pf6N2E2_3733 0.11 -0.4
4,346,456 + Pf6N2E2_3733 0.11 -1.2
4,346,456 + Pf6N2E2_3733 0.11 -0.5
4,346,476 + Pf6N2E2_3733 0.11 -0.5
4,346,722 + Pf6N2E2_3733 0.17 +0.3
4,346,722 + Pf6N2E2_3733 0.17 +1.1
4,346,733 + Pf6N2E2_3733 0.18 +2.1
4,346,733 + Pf6N2E2_3733 0.18 +0.7
4,346,733 + Pf6N2E2_3733 0.18 -0.2
4,346,830 + Pf6N2E2_3733 0.20 +1.0
4,346,830 + Pf6N2E2_3733 0.20 -0.4
4,346,831 - Pf6N2E2_3733 0.20 -0.6
4,346,831 - Pf6N2E2_3733 0.20 +0.3
4,346,831 - Pf6N2E2_3733 0.20 -0.0

Or see this region's nucleotide sequence