Experiment: R2A with Other_metal_mix 1 X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02860 and LRK54_RS02865 are separated by 32 nucleotides LRK54_RS02865 and LRK54_RS02870 are separated by 178 nucleotides LRK54_RS02870 and LRK54_RS02875 overlap by 4 nucleotides
LRK54_RS02860: LRK54_RS02860 - type II toxin-antitoxin system HicB family antitoxin, at 613,392 to 613,811
_RS02860
LRK54_RS02865: LRK54_RS02865 - type II toxin-antitoxin system HicA family toxin, at 613,844 to 614,020
_RS02865
LRK54_RS02870: LRK54_RS02870 - DUF502 domain-containing protein, at 614,199 to 614,876
_RS02870
LRK54_RS02875: LRK54_RS02875 - M14 family metallopeptidase, at 614,873 to 616,705
_RS02875
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.074 kb on + strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.075 kb on - strand at 613.086 kb on - strand at 613.086 kb on - strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.173 kb on + strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.174 kb on - strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.323 kb on + strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.324 kb on - strand at 613.393 kb on + strand at 613.393 kb on + strand at 613.394 kb on - strand at 613.394 kb on - strand at 613.394 kb on - strand at 613.394 kb on - strand at 613.567 kb on + strand, within LRK54_RS02860 at 613.841 kb on + strand at 613.841 kb on + strand at 613.841 kb on + strand at 613.842 kb on - strand at 613.842 kb on - strand at 613.935 kb on + strand, within LRK54_RS02865 at 613.936 kb on - strand, within LRK54_RS02865 at 614.013 kb on + strand at 614.013 kb on + strand at 614.013 kb on + strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.014 kb on - strand at 614.052 kb on + strand at 614.052 kb on + strand at 614.052 kb on + strand at 614.052 kb on + strand at 614.053 kb on - strand at 614.053 kb on - strand at 614.053 kb on - strand at 614.053 kb on - strand at 614.134 kb on + strand at 614.134 kb on + strand at 614.134 kb on + strand at 614.134 kb on + strand at 614.134 kb on + strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.135 kb on - strand at 614.164 kb on + strand at 614.164 kb on + strand at 614.164 kb on + strand at 614.164 kb on + strand at 614.164 kb on + strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.165 kb on - strand at 614.223 kb on + strand at 614.224 kb on - strand at 614.364 kb on - strand, within LRK54_RS02870 at 614.364 kb on - strand, within LRK54_RS02870 at 614.364 kb on - strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.433 kb on + strand, within LRK54_RS02870 at 614.434 kb on - strand, within LRK54_RS02870 at 614.434 kb on - strand, within LRK54_RS02870 at 614.434 kb on - strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.529 kb on + strand, within LRK54_RS02870 at 614.530 kb on - strand, within LRK54_RS02870 at 614.530 kb on - strand, within LRK54_RS02870 at 614.558 kb on - strand, within LRK54_RS02870 at 614.721 kb on + strand, within LRK54_RS02870 at 615.002 kb on + strand at 615.002 kb on + strand at 615.002 kb on + strand at 615.003 kb on - strand at 615.003 kb on - strand at 615.003 kb on - strand at 615.020 kb on + strand at 615.020 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Other_metal_mix 1 X remove 613,074 + -1.1 613,074 + +0.5 613,074 + -2.1 613,074 + -1.1 613,074 + -0.3 613,074 + -0.5 613,074 + -0.5 613,074 + -0.9 613,074 + +2.1 613,075 - +0.5 613,075 - +0.3 613,075 - +0.8 613,075 - +0.4 613,075 - +3.3 613,075 - -0.3 613,075 - -1.1 613,075 - -1.6 613,075 - -0.9 613,086 - -0.7 613,086 - +0.9 613,173 + -0.3 613,173 + +0.5 613,173 + +1.6 613,173 + -0.7 613,173 + +0.3 613,174 - +1.1 613,174 - +0.4 613,174 - +0.6 613,174 - +2.3 613,174 - -0.0 613,174 - +2.3 613,323 + -0.4 613,323 + +0.2 613,323 + -0.5 613,323 + +0.3 613,323 + -1.6 613,323 + -0.2 613,323 + +0.9 613,323 + -0.9 613,323 + +0.1 613,323 + -0.3 613,323 + +0.4 613,323 + +0.2 613,324 - +0.4 613,324 - -0.0 613,324 - -0.1 613,324 - -0.0 613,324 - -0.4 613,324 - +0.1 613,324 - -0.1 613,324 - -0.9 613,324 - +0.4 613,324 - +0.1 613,324 - -1.3 613,324 - -1.1 613,393 + -1.0 613,393 + +0.3 613,394 - -0.0 613,394 - +0.4 613,394 - -1.4 613,394 - -1.9 613,567 + LRK54_RS02860 0.42 +0.6 613,841 + -0.7 613,841 + +0.3 613,841 + -0.1 613,842 - -1.2 613,842 - +2.3 613,935 + LRK54_RS02865 0.51 -2.2 613,936 - LRK54_RS02865 0.52 -0.1 614,013 + +0.4 614,013 + -0.3 614,013 + -1.1 614,014 - -1.6 614,014 - +1.6 614,014 - +1.5 614,014 - +1.0 614,014 - +0.2 614,014 - -0.1 614,052 + -0.5 614,052 + -0.5 614,052 + -0.1 614,052 + -0.3 614,053 - +0.3 614,053 - +0.1 614,053 - +1.7 614,053 - -1.8 614,134 + +0.3 614,134 + +2.3 614,134 + -0.1 614,134 + -0.7 614,134 + +1.4 614,135 - -1.8 614,135 - +0.2 614,135 - -0.7 614,135 - +0.7 614,135 - -1.1 614,135 - +0.1 614,164 + +0.8 614,164 + +1.0 614,164 + -0.3 614,164 + -0.9 614,164 + +0.8 614,165 - -0.5 614,165 - -0.1 614,165 - +0.2 614,165 - -0.1 614,165 - +0.8 614,165 - +0.6 614,165 - +0.2 614,223 + -0.2 614,224 - -0.2 614,364 - LRK54_RS02870 0.24 +0.1 614,364 - LRK54_RS02870 0.24 +1.2 614,364 - LRK54_RS02870 0.24 -1.6 614,433 + LRK54_RS02870 0.35 +1.1 614,433 + LRK54_RS02870 0.35 -0.0 614,433 + LRK54_RS02870 0.35 -3.2 614,433 + LRK54_RS02870 0.35 -1.4 614,433 + LRK54_RS02870 0.35 -0.5 614,433 + LRK54_RS02870 0.35 +0.3 614,433 + LRK54_RS02870 0.35 -0.9 614,433 + LRK54_RS02870 0.35 -0.0 614,434 - LRK54_RS02870 0.35 +0.6 614,434 - LRK54_RS02870 0.35 -1.9 614,434 - LRK54_RS02870 0.35 +0.4 614,529 + LRK54_RS02870 0.49 -0.5 614,529 + LRK54_RS02870 0.49 -0.6 614,529 + LRK54_RS02870 0.49 +0.1 614,529 + LRK54_RS02870 0.49 +1.1 614,529 + LRK54_RS02870 0.49 -0.9 614,529 + LRK54_RS02870 0.49 -1.0 614,529 + LRK54_RS02870 0.49 -0.5 614,529 + LRK54_RS02870 0.49 -1.0 614,529 + LRK54_RS02870 0.49 -0.5 614,530 - LRK54_RS02870 0.49 +1.3 614,530 - LRK54_RS02870 0.49 +0.1 614,558 - LRK54_RS02870 0.53 -1.8 614,721 + LRK54_RS02870 0.77 +0.2 615,002 + -0.9 615,002 + -0.4 615,002 + -0.5 615,003 - +0.0 615,003 - +1.4 615,003 - +0.1 615,020 + -0.6 615,020 + +0.5
Or see this region's nucleotide sequence