Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23930

Experiment: R2A with Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS23920 and CA265_RS23925 are separated by 289 nucleotidesCA265_RS23925 and CA265_RS23930 overlap by 23 nucleotidesCA265_RS23930 and CA265_RS23935 are separated by 89 nucleotidesCA265_RS23935 and CA265_RS23940 are separated by 97 nucleotides CA265_RS23920: CA265_RS23920 - DNA primase, at 5,834,365 to 5,836,344 _RS23920 CA265_RS23925: CA265_RS23925 - endonuclease, at 5,836,634 to 5,836,999 _RS23925 CA265_RS23930: CA265_RS23930 - glutamine cyclotransferase, at 5,836,977 to 5,838,059 _RS23930 CA265_RS23935: CA265_RS23935 - hypothetical protein, at 5,838,149 to 5,838,679 _RS23935 CA265_RS23940: CA265_RS23940 - hypothetical protein, at 5,838,777 to 5,839,409 _RS23940 Position (kb) 5836 5837 5838 5839Strain fitness (log2 ratio) -3 -2 -1 0 1at 5836.394 kb on + strandat 5836.401 kb on + strandat 5836.409 kb on + strandat 5836.410 kb on - strandat 5836.411 kb on + strandat 5836.412 kb on - strandat 5836.412 kb on - strandat 5836.449 kb on - strandat 5836.455 kb on + strandat 5836.455 kb on + strandat 5836.474 kb on + strandat 5836.503 kb on + strandat 5836.503 kb on + strandat 5836.542 kb on - strandat 5836.569 kb on + strandat 5836.570 kb on - strandat 5836.574 kb on - strandat 5836.582 kb on - strandat 5836.653 kb on + strandat 5836.672 kb on + strand, within CA265_RS23925at 5836.713 kb on + strandat 5836.730 kb on + strand, within CA265_RS23925at 5836.731 kb on - strand, within CA265_RS23925at 5836.731 kb on - strand, within CA265_RS23925at 5836.786 kb on - strand, within CA265_RS23925at 5836.801 kb on + strand, within CA265_RS23925at 5836.881 kb on - strand, within CA265_RS23925at 5836.882 kb on + strand, within CA265_RS23925at 5836.891 kb on - strand, within CA265_RS23925at 5836.971 kb on + strandat 5836.971 kb on + strandat 5837.067 kb on - strandat 5837.076 kb on + strandat 5837.076 kb on + strandat 5837.077 kb on - strandat 5837.077 kb on - strandat 5837.198 kb on + strand, within CA265_RS23930at 5837.199 kb on - strand, within CA265_RS23930at 5837.262 kb on - strand, within CA265_RS23930at 5837.329 kb on + strand, within CA265_RS23930at 5837.330 kb on - strand, within CA265_RS23930at 5837.330 kb on - strand, within CA265_RS23930at 5837.355 kb on + strand, within CA265_RS23930at 5837.356 kb on - strand, within CA265_RS23930at 5837.361 kb on + strand, within CA265_RS23930at 5837.391 kb on - strand, within CA265_RS23930at 5837.401 kb on - strand, within CA265_RS23930at 5837.405 kb on - strand, within CA265_RS23930at 5837.530 kb on - strand, within CA265_RS23930at 5837.575 kb on + strand, within CA265_RS23930at 5837.602 kb on + strand, within CA265_RS23930at 5837.603 kb on - strand, within CA265_RS23930at 5837.603 kb on - strand, within CA265_RS23930at 5837.605 kb on - strand, within CA265_RS23930at 5837.609 kb on + strand, within CA265_RS23930at 5837.609 kb on + strand, within CA265_RS23930at 5837.609 kb on + strand, within CA265_RS23930at 5837.610 kb on - strand, within CA265_RS23930at 5837.610 kb on - strand, within CA265_RS23930at 5837.692 kb on + strand, within CA265_RS23930at 5837.692 kb on + strand, within CA265_RS23930at 5837.738 kb on + strand, within CA265_RS23930at 5837.738 kb on + strand, within CA265_RS23930at 5837.742 kb on + strand, within CA265_RS23930at 5837.778 kb on - strand, within CA265_RS23930at 5837.843 kb on + strand, within CA265_RS23930at 5838.030 kb on - strandat 5838.030 kb on - strandat 5838.104 kb on + strandat 5838.104 kb on + strandat 5838.104 kb on + strandat 5838.104 kb on + strandat 5838.112 kb on + strandat 5838.116 kb on + strandat 5838.173 kb on + strandat 5838.174 kb on - strandat 5838.177 kb on + strandat 5838.177 kb on + strandat 5838.231 kb on + strand, within CA265_RS23935at 5838.289 kb on + strand, within CA265_RS23935at 5838.307 kb on - strand, within CA265_RS23935at 5838.355 kb on + strand, within CA265_RS23935at 5838.361 kb on + strand, within CA265_RS23935at 5838.431 kb on - strand, within CA265_RS23935at 5838.593 kb on + strand, within CA265_RS23935at 5838.739 kb on - strandat 5838.770 kb on - strandat 5838.778 kb on + strandat 5838.785 kb on + strandat 5838.788 kb on - strandat 5838.789 kb on + strandat 5838.798 kb on + strandat 5838.825 kb on + strandat 5838.858 kb on + strand, within CA265_RS23940at 5838.878 kb on + strand, within CA265_RS23940at 5838.897 kb on - strand, within CA265_RS23940at 5839.016 kb on + strand, within CA265_RS23940at 5839.042 kb on + strand, within CA265_RS23940at 5839.042 kb on + strand, within CA265_RS23940

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Aluminum chloride 1 mM
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5,836,394 + +0.1
5,836,401 + +0.4
5,836,409 + -0.4
5,836,410 - +0.1
5,836,411 + -0.7
5,836,412 - -0.4
5,836,412 - -0.6
5,836,449 - -0.8
5,836,455 + +0.5
5,836,455 + -0.5
5,836,474 + +0.1
5,836,503 + -0.2
5,836,503 + +0.9
5,836,542 - -0.5
5,836,569 + -0.4
5,836,570 - -0.8
5,836,574 - -0.6
5,836,582 - +0.4
5,836,653 + +0.2
5,836,672 + CA265_RS23925 0.10 +0.6
5,836,713 + +0.1
5,836,730 + CA265_RS23925 0.26 +0.4
5,836,731 - CA265_RS23925 0.27 -0.5
5,836,731 - CA265_RS23925 0.27 +0.0
5,836,786 - CA265_RS23925 0.42 +0.1
5,836,801 + CA265_RS23925 0.46 -0.2
5,836,881 - CA265_RS23925 0.67 -2.4
5,836,882 + CA265_RS23925 0.68 +0.2
5,836,891 - CA265_RS23925 0.70 +0.1
5,836,971 + -1.4
5,836,971 + -1.9
5,837,067 - +0.2
5,837,076 + -0.6
5,837,076 + +1.2
5,837,077 - +0.2
5,837,077 - -0.1
5,837,198 + CA265_RS23930 0.20 -0.8
5,837,199 - CA265_RS23930 0.20 -2.3
5,837,262 - CA265_RS23930 0.26 -0.5
5,837,329 + CA265_RS23930 0.33 -1.4
5,837,330 - CA265_RS23930 0.33 -0.5
5,837,330 - CA265_RS23930 0.33 -1.7
5,837,355 + CA265_RS23930 0.35 -1.0
5,837,356 - CA265_RS23930 0.35 -0.3
5,837,361 + CA265_RS23930 0.35 -1.2
5,837,391 - CA265_RS23930 0.38 -1.1
5,837,401 - CA265_RS23930 0.39 -0.7
5,837,405 - CA265_RS23930 0.40 -0.7
5,837,530 - CA265_RS23930 0.51 +0.3
5,837,575 + CA265_RS23930 0.55 -0.8
5,837,602 + CA265_RS23930 0.58 -1.2
5,837,603 - CA265_RS23930 0.58 -0.4
5,837,603 - CA265_RS23930 0.58 -0.5
5,837,605 - CA265_RS23930 0.58 -1.7
5,837,609 + CA265_RS23930 0.58 -0.6
5,837,609 + CA265_RS23930 0.58 -0.9
5,837,609 + CA265_RS23930 0.58 -3.0
5,837,610 - CA265_RS23930 0.58 -0.2
5,837,610 - CA265_RS23930 0.58 -1.4
5,837,692 + CA265_RS23930 0.66 +0.1
5,837,692 + CA265_RS23930 0.66 -0.7
5,837,738 + CA265_RS23930 0.70 -1.9
5,837,738 + CA265_RS23930 0.70 -0.6
5,837,742 + CA265_RS23930 0.71 -0.4
5,837,778 - CA265_RS23930 0.74 -1.0
5,837,843 + CA265_RS23930 0.80 -1.5
5,838,030 - -0.5
5,838,030 - -1.0
5,838,104 + +0.4
5,838,104 + -1.1
5,838,104 + +0.3
5,838,104 + +0.2
5,838,112 + +0.5
5,838,116 + +0.3
5,838,173 + +0.2
5,838,174 - -2.8
5,838,177 + +0.9
5,838,177 + +0.0
5,838,231 + CA265_RS23935 0.15 +1.4
5,838,289 + CA265_RS23935 0.26 -0.4
5,838,307 - CA265_RS23935 0.30 -1.4
5,838,355 + CA265_RS23935 0.39 -1.1
5,838,361 + CA265_RS23935 0.40 +0.2
5,838,431 - CA265_RS23935 0.53 -0.9
5,838,593 + CA265_RS23935 0.84 -0.4
5,838,739 - -0.6
5,838,770 - -0.2
5,838,778 + +0.1
5,838,785 + +0.3
5,838,788 - -0.9
5,838,789 + +0.9
5,838,798 + +0.9
5,838,825 + +0.1
5,838,858 + CA265_RS23940 0.13 -0.0
5,838,878 + CA265_RS23940 0.16 +0.1
5,838,897 - CA265_RS23940 0.19 +1.1
5,839,016 + CA265_RS23940 0.38 -0.6
5,839,042 + CA265_RS23940 0.42 -0.8
5,839,042 + CA265_RS23940 0.42 -0.0

Or see this region's nucleotide sequence