Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS23840

Experiment: R2A with Aluminum chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Aluminum chloride 1 mM
5,816,930	-		CA265_RS23830	0.16	-0.6
5,817,061	-		CA265_RS23830	0.46	+0.3
5,817,061	-		CA265_RS23830	0.46	-0.7
5,817,061	-		CA265_RS23830	0.46	-0.7
5,817,109	+		CA265_RS23830	0.57	+0.0
5,817,110	-		CA265_RS23830	0.57	-0.4
5,817,114	+		CA265_RS23830	0.58	+0.3
5,817,114	+		CA265_RS23830	0.58	+0.2
5,817,140	-		CA265_RS23830	0.64	+0.1
5,817,265	+				-0.7
5,817,300	-				-0.9
5,817,323	+				+0.1
5,817,335	+				+0.1
5,817,336	-				-0.4
5,817,336	-				-0.1
5,817,366	+		CA265_RS23835	0.15	-1.6
5,817,395	+		CA265_RS23835	0.22	+0.8
5,817,395	+		CA265_RS23835	0.22	-1.0
5,817,396	-		CA265_RS23835	0.22	-1.2
5,817,407	-		CA265_RS23835	0.25	+0.4
5,817,424	+		CA265_RS23835	0.29	-1.5
5,817,477	+		CA265_RS23835	0.41	+1.5
5,817,539	+		CA265_RS23835	0.55	-0.3
5,817,539	+		CA265_RS23835	0.55	+0.5
5,817,605	-		CA265_RS23835	0.70	-1.1
5,817,605	-		CA265_RS23835	0.70	-0.8
5,817,658	-		CA265_RS23835	0.82	-0.1
5,817,745	-				+0.1
5,817,763	+				-0.4
5,817,788	-				-0.6
5,817,796	-				+0.6
5,817,844	+				-0.3
5,817,847	-				+0.1
5,817,867	+				+0.1
5,817,867	+				+0.6
5,817,911	+				-2.1
5,817,954	+		CA265_RS23840	0.12	-0.2
5,817,960	-		CA265_RS23840	0.12	+0.2
5,817,960	-		CA265_RS23840	0.12	+1.2
5,817,965	-		CA265_RS23840	0.13	+0.1
5,817,965	-		CA265_RS23840	0.13	-2.1
5,818,009	-		CA265_RS23840	0.18	-1.0
5,818,039	+		CA265_RS23840	0.22	+3.2
5,818,051	+		CA265_RS23840	0.24	+1.2
5,818,055	+		CA265_RS23840	0.24	-0.4
5,818,101	+		CA265_RS23840	0.30	+0.8
5,818,232	+		CA265_RS23840	0.46	+0.2
5,818,233	-		CA265_RS23840	0.46	+0.2
5,818,289	-		CA265_RS23840	0.53	+0.6
5,818,317	-		CA265_RS23840	0.57	+0.5
5,818,371	+		CA265_RS23840	0.63	+0.6
5,818,373	+		CA265_RS23840	0.64	+0.3
5,818,427	-		CA265_RS23840	0.70	+0.4
5,818,438	+		CA265_RS23840	0.72	+0.8
5,818,496	+		CA265_RS23840	0.79	+1.0
5,818,496	+		CA265_RS23840	0.79	-0.1
5,818,533	-		CA265_RS23840	0.83	+0.4
5,818,559	+		CA265_RS23840	0.87	+2.4
5,818,559	+		CA265_RS23840	0.87	+1.2
5,818,560	-		CA265_RS23840	0.87	+1.2
5,818,562	-		CA265_RS23840	0.87	+0.7
5,818,562	-		CA265_RS23840	0.87	-0.0
5,818,602	-				-1.4
5,818,605	+				+0.5
5,818,605	+				-0.0
5,818,606	-				+2.1
5,818,606	-				-0.1
5,818,606	-				-0.4
5,818,606	-				+0.6
5,818,649	-				+0.3
5,818,669	+				+0.4
5,818,802	+		CA265_RS23845	0.26	-1.8
5,818,802	+		CA265_RS23845	0.26	-0.1
5,818,831	+		CA265_RS23845	0.32	+0.6
5,818,831	+		CA265_RS23845	0.32	+0.2
5,818,864	-		CA265_RS23845	0.38	-0.2
5,818,881	+		CA265_RS23845	0.41	-0.3
5,818,885	+		CA265_RS23845	0.42	+1.1
5,818,900	+		CA265_RS23845	0.45	-1.2
5,818,967	+		CA265_RS23845	0.58	-0.2
5,819,015	-		CA265_RS23845	0.67	-0.3
5,819,069	+		CA265_RS23845	0.78	-0.4
5,819,091	+		CA265_RS23845	0.82	+0.2
5,819,093	+		CA265_RS23845	0.82	-0.4
5,819,115	+		CA265_RS23845	0.87	+0.2
5,819,116	-		CA265_RS23845	0.87	+0.8
5,819,136	-				+0.6
5,819,149	+				+0.1
5,819,229	+		CA265_RS23850	0.16	-0.4
5,819,230	-		CA265_RS23850	0.16	-0.3
5,819,261	-		CA265_RS23850	0.30	-0.1
5,819,305	-		CA265_RS23850	0.48	-0.2
5,819,305	-		CA265_RS23850	0.48	-2.1
5,819,325	+		CA265_RS23850	0.57	+0.3
5,819,377	+		CA265_RS23850	0.78	+0.1
5,819,377	+		CA265_RS23850	0.78	+0.2
5,819,378	-		CA265_RS23850	0.79	-0.0
5,819,378	-		CA265_RS23850	0.79	+0.3
5,819,378	-		CA265_RS23850	0.79	+0.2
5,819,421	+				-0.2
5,819,487	+				-1.7
5,819,487	+				+0.4
5,819,531	-				-0.0
5,819,531	-				-0.1
5,819,545	-				-0.4
5,819,575	-				+1.1
5,819,620	+				-0.4
5,819,620	+				-0.3