Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15945
Experiment: R2A with Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Aluminum chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
4,002,055 | + | CA265_RS15935 | 0.49 | +0.3 | |
4,002,056 | - | CA265_RS15935 | 0.49 | +0.0 | |
4,002,056 | - | CA265_RS15935 | 0.49 | +1.3 | |
4,002,056 | - | CA265_RS15935 | 0.49 | -0.4 | |
4,002,056 | - | CA265_RS15935 | 0.49 | -0.3 | |
4,002,058 | - | CA265_RS15935 | 0.49 | +1.7 | |
4,002,100 | + | CA265_RS15935 | 0.57 | +0.7 | |
4,002,149 | - | CA265_RS15935 | 0.67 | -0.1 | |
4,002,298 | - | +0.5 | |||
4,002,302 | - | -0.7 | |||
4,003,038 | - | -2.2 | |||
4,003,056 | - | -4.1 | |||
4,003,195 | - | CA265_RS15945 | 0.19 | -0.3 | |
4,003,246 | - | CA265_RS15945 | 0.25 | -1.6 | |
4,003,273 | - | CA265_RS15945 | 0.28 | -2.5 | |
4,003,285 | - | CA265_RS15945 | 0.29 | +0.1 | |
4,003,327 | - | CA265_RS15945 | 0.34 | -0.8 | |
4,003,443 | - | CA265_RS15945 | 0.47 | -1.2 | |
4,003,491 | - | CA265_RS15945 | 0.53 | -0.4 | |
4,003,557 | - | CA265_RS15945 | 0.61 | -0.2 | |
4,003,859 | - | -1.3 | |||
4,003,913 | + | +0.3 | |||
4,003,913 | + | -0.4 | |||
4,003,990 | + | +0.3 |
Or see this region's nucleotide sequence