Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15930

Experiment: R2A with Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS15920 and CA265_RS15925 overlap by 1 nucleotidesCA265_RS15925 and CA265_RS15930 are separated by 45 nucleotidesCA265_RS15930 and CA265_RS15935 are separated by 225 nucleotidesCA265_RS15935 and CA265_RS15940 overlap by 1 nucleotides CA265_RS15920: CA265_RS15920 - hypothetical protein, at 3,999,531 to 4,000,274 _RS15920 CA265_RS15925: CA265_RS15925 - hypothetical protein, at 4,000,274 to 4,000,507 _RS15925 CA265_RS15930: CA265_RS15930 - uroporphyrinogen decarboxylase, at 4,000,553 to 4,001,578 _RS15930 CA265_RS15935: CA265_RS15935 - hypothetical protein, at 4,001,804 to 4,002,319 _RS15935 CA265_RS15940: CA265_RS15940 - DNA-binding response regulator, at 4,002,319 to 4,003,023 _RS15940 Position (kb) 4000 4001 4002Strain fitness (log2 ratio) -2 -1 0 1 2at 3999.685 kb on - strand, within CA265_RS15920at 3999.691 kb on - strand, within CA265_RS15920at 3999.739 kb on - strand, within CA265_RS15920at 3999.801 kb on - strand, within CA265_RS15920at 3999.801 kb on - strand, within CA265_RS15920at 3999.818 kb on - strand, within CA265_RS15920at 3999.827 kb on - strand, within CA265_RS15920at 3999.915 kb on + strand, within CA265_RS15920at 3999.922 kb on + strand, within CA265_RS15920at 3999.984 kb on - strand, within CA265_RS15920at 4000.101 kb on + strand, within CA265_RS15920at 4000.101 kb on + strand, within CA265_RS15920at 4000.116 kb on + strand, within CA265_RS15920at 4000.116 kb on + strand, within CA265_RS15920at 4000.116 kb on + strand, within CA265_RS15920at 4000.200 kb on + strandat 4000.212 kb on + strandat 4000.218 kb on - strandat 4000.218 kb on - strandat 4000.259 kb on + strandat 4000.260 kb on - strandat 4000.276 kb on - strandat 4000.508 kb on - strandat 4000.528 kb on - strandat 4000.557 kb on + strandat 4001.635 kb on - strandat 4001.635 kb on - strandat 4001.730 kb on - strandat 4001.730 kb on - strandat 4001.889 kb on + strand, within CA265_RS15935at 4001.890 kb on - strand, within CA265_RS15935at 4001.908 kb on + strand, within CA265_RS15935at 4001.930 kb on - strand, within CA265_RS15935at 4001.945 kb on + strand, within CA265_RS15935at 4001.953 kb on - strand, within CA265_RS15935at 4002.055 kb on + strand, within CA265_RS15935at 4002.056 kb on - strand, within CA265_RS15935at 4002.056 kb on - strand, within CA265_RS15935at 4002.056 kb on - strand, within CA265_RS15935at 4002.056 kb on - strand, within CA265_RS15935at 4002.058 kb on - strand, within CA265_RS15935at 4002.100 kb on + strand, within CA265_RS15935at 4002.149 kb on - strand, within CA265_RS15935at 4002.298 kb on - strandat 4002.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Aluminum chloride 1 mM
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3,999,685 - CA265_RS15920 0.21 +0.5
3,999,691 - CA265_RS15920 0.22 -0.1
3,999,739 - CA265_RS15920 0.28 +0.2
3,999,801 - CA265_RS15920 0.36 +0.1
3,999,801 - CA265_RS15920 0.36 -1.0
3,999,818 - CA265_RS15920 0.39 -0.1
3,999,827 - CA265_RS15920 0.40 +0.3
3,999,915 + CA265_RS15920 0.52 -0.8
3,999,922 + CA265_RS15920 0.53 +0.3
3,999,984 - CA265_RS15920 0.61 -0.1
4,000,101 + CA265_RS15920 0.77 -0.0
4,000,101 + CA265_RS15920 0.77 -0.3
4,000,116 + CA265_RS15920 0.79 +0.1
4,000,116 + CA265_RS15920 0.79 -0.1
4,000,116 + CA265_RS15920 0.79 +0.9
4,000,200 + -0.5
4,000,212 + -0.7
4,000,218 - +0.5
4,000,218 - +1.8
4,000,259 + -0.2
4,000,260 - +0.3
4,000,276 - -0.1
4,000,508 - +0.3
4,000,528 - +0.8
4,000,557 + -2.2
4,001,635 - -0.1
4,001,635 - +0.3
4,001,730 - -0.2
4,001,730 - -0.4
4,001,889 + CA265_RS15935 0.16 -0.2
4,001,890 - CA265_RS15935 0.17 +0.7
4,001,908 + CA265_RS15935 0.20 -0.3
4,001,930 - CA265_RS15935 0.24 -0.7
4,001,945 + CA265_RS15935 0.27 +1.2
4,001,953 - CA265_RS15935 0.29 +0.0
4,002,055 + CA265_RS15935 0.49 +0.3
4,002,056 - CA265_RS15935 0.49 +0.0
4,002,056 - CA265_RS15935 0.49 +1.3
4,002,056 - CA265_RS15935 0.49 -0.4
4,002,056 - CA265_RS15935 0.49 -0.3
4,002,058 - CA265_RS15935 0.49 +1.7
4,002,100 + CA265_RS15935 0.57 +0.7
4,002,149 - CA265_RS15935 0.67 -0.1
4,002,298 - +0.5
4,002,302 - -0.7

Or see this region's nucleotide sequence