Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07980

Experiment: R2A with Aluminum chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Aluminum chloride 1 mM
1,989,898	-		CA265_RS07975	0.35	-0.3
1,989,943	-		CA265_RS07975	0.38	+1.0
1,990,029	+		CA265_RS07975	0.44	-1.9
1,990,030	-		CA265_RS07975	0.44	-0.7
1,990,036	+				-0.8
1,990,037	-		CA265_RS07975	0.45	-0.3
1,990,072	-		CA265_RS07975	0.47	-0.7
1,990,077	-		CA265_RS07975	0.48	-0.1
1,990,077	-		CA265_RS07975	0.48	-0.2
1,990,079	-		CA265_RS07975	0.48	+0.2
1,990,082	+		CA265_RS07975	0.48	-1.5
1,990,102	-		CA265_RS07975	0.50	-0.0
1,990,154	+		CA265_RS07975	0.53	+0.4
1,990,158	+		CA265_RS07975	0.54	-0.2
1,990,159	-		CA265_RS07975	0.54	+0.7
1,990,159	-		CA265_RS07975	0.54	+0.8
1,990,180	-		CA265_RS07975	0.55	+0.1
1,990,186	-		CA265_RS07975	0.56	-0.0
1,990,273	-		CA265_RS07975	0.62	-0.2
1,990,302	+		CA265_RS07975	0.64	-1.6
1,990,303	-		CA265_RS07975	0.64	+0.0
1,990,328	-		CA265_RS07975	0.66	-0.3
1,990,332	-		CA265_RS07975	0.66	+0.5
1,990,332	-		CA265_RS07975	0.66	-0.5
1,990,360	-		CA265_RS07975	0.68	-0.0
1,990,367	+		CA265_RS07975	0.69	+0.7
1,990,377	-		CA265_RS07975	0.70	+0.1
1,990,390	-		CA265_RS07975	0.71	+0.6
1,990,390	-		CA265_RS07975	0.71	-0.3
1,990,421	+		CA265_RS07975	0.73	-0.1
1,990,427	+		CA265_RS07975	0.73	+1.2
1,990,428	-		CA265_RS07975	0.73	-1.1
1,990,428	-		CA265_RS07975	0.73	-0.8
1,990,459	-		CA265_RS07975	0.76	+0.3
1,990,488	+		CA265_RS07975	0.78	-0.1
1,990,503	+		CA265_RS07975	0.79	-0.0
1,990,511	-		CA265_RS07975	0.79	+0.2
1,990,559	+		CA265_RS07975	0.83	-1.5
1,990,560	-		CA265_RS07975	0.83	-0.1
1,990,573	-		CA265_RS07975	0.84	+0.0
1,990,605	-		CA265_RS07975	0.86	+0.4
1,990,609	-		CA265_RS07975	0.86	+0.3
1,990,636	+		CA265_RS07975	0.88	-0.2
1,990,650	+		CA265_RS07975	0.89	-0.2
1,990,720	+				-0.4
1,990,727	-				-0.2
1,990,765	-				+0.7
1,990,813	-				-0.4
1,990,827	-				-1.3
1,990,839	+				-0.7
1,990,882	-				-1.3
1,990,902	+				+0.0
1,990,982	-				-0.1
1,991,050	+		CA265_RS07980	0.15	+0.4
1,991,116	+		CA265_RS07980	0.21	+0.2
1,991,196	+		CA265_RS07980	0.28	-1.0
1,991,202	-		CA265_RS07980	0.28	-0.5
1,991,206	-		CA265_RS07980	0.29	+0.2
1,991,247	+		CA265_RS07980	0.32	+0.3
1,991,286	+		CA265_RS07980	0.36	+0.7
1,991,303	+		CA265_RS07980	0.37	-0.2
1,991,375	+		CA265_RS07980	0.43	-0.3
1,991,413	+		CA265_RS07980	0.47	+0.4
1,991,442	-		CA265_RS07980	0.49	-1.2
1,991,619	-		CA265_RS07980	0.64	-0.6
1,991,631	-		CA265_RS07980	0.66	+0.1
1,991,665	+		CA265_RS07980	0.68	-0.5
1,991,668	-		CA265_RS07980	0.69	-0.1
1,991,731	+		CA265_RS07980	0.74	+0.0
1,991,760	-		CA265_RS07980	0.77	+0.3
1,991,790	-		CA265_RS07980	0.79	-0.4
1,991,794	-		CA265_RS07980	0.80	-0.3
1,991,925	+				+0.5
1,992,093	+				+0.2
1,992,100	-				-0.2
1,992,138	+				-0.1
1,992,224	-		CA265_RS07985	0.17	+0.4
1,992,224	-		CA265_RS07985	0.17	+0.3
1,992,271	-		CA265_RS07985	0.23	-0.1
1,992,284	+		CA265_RS07985	0.25	-0.3
1,992,284	+		CA265_RS07985	0.25	+0.7
1,992,285	-		CA265_RS07985	0.25	+0.3
1,992,378	+		CA265_RS07985	0.36	+0.6
1,992,452	+		CA265_RS07985	0.46	+0.9
1,992,453	-		CA265_RS07985	0.46	+0.4
1,992,453	-		CA265_RS07985	0.46	+0.3
1,992,523	-		CA265_RS07985	0.54	-0.0
1,992,565	-		CA265_RS07985	0.60	+0.1
1,992,567	+		CA265_RS07985	0.60	-0.1
1,992,630	+		CA265_RS07985	0.68	+0.2
1,992,630	+		CA265_RS07985	0.68	-0.8
1,992,705	-		CA265_RS07985	0.77	+0.2
1,992,705	-		CA265_RS07985	0.77	+0.4
1,992,842	-				+0.3
1,992,868	+				+0.0
1,992,869	-				-0.6
1,992,893	+				-0.4
1,992,893	+				-2.5
1,992,893	+				+0.4
1,992,973	-				-0.2
1,992,986	-				-0.3
1,993,020	+		CA265_RS07990	0.12	+1.2
1,993,021	-		CA265_RS07990	0.12	-0.8
1,993,021	-		CA265_RS07990	0.12	+0.4