Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20075

Experiment: CDM1 without Phenylalanine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Phenylalanine
2,303,335	-		BBR_RS20070	0.27	+0.9
2,303,342	-		BBR_RS20070	0.28	-1.6
2,303,345	-		BBR_RS20070	0.29	-1.2
2,303,349	-		BBR_RS20070	0.29	+0.4
2,303,349	-		BBR_RS20070	0.29	-0.7
2,303,401	-		BBR_RS20070	0.35	+0.9
2,303,410	+		BBR_RS20070	0.36	+0.3
2,303,426	-		BBR_RS20070	0.38	-2.5
2,303,518	+		BBR_RS20070	0.49	+1.0
2,303,535	-		BBR_RS20070	0.51	-1.6
2,303,535	-		BBR_RS20070	0.51	-2.7
2,303,566	+		BBR_RS20070	0.55	+0.3
2,303,566	+		BBR_RS20070	0.55	-1.0
2,303,589	-		BBR_RS20070	0.57	-0.9
2,303,594	-		BBR_RS20070	0.58	-2.6
2,303,600	-		BBR_RS20070	0.58	+0.8
2,303,625	+		BBR_RS20070	0.61	-0.6
2,303,645	+		BBR_RS20070	0.64	-1.1
2,303,648	-		BBR_RS20070	0.64	+0.3
2,303,650	+		BBR_RS20070	0.64	+0.2
2,303,653	-		BBR_RS20070	0.65	+1.6
2,303,653	-		BBR_RS20070	0.65	-0.2
2,303,670	-		BBR_RS20070	0.67	-0.3
2,303,672	+		BBR_RS20070	0.67	-1.1
2,303,672	+		BBR_RS20070	0.67	-0.9
2,303,672	+		BBR_RS20070	0.67	+2.2
2,303,680	-		BBR_RS20070	0.68	+1.3
2,303,680	-		BBR_RS20070	0.68	-1.8
2,303,680	-		BBR_RS20070	0.68	+1.7
2,303,687	-		BBR_RS20070	0.69	+0.4
2,303,711	-		BBR_RS20070	0.71	-3.1
2,303,723	-		BBR_RS20070	0.73	-0.3
2,303,723	-		BBR_RS20070	0.73	-0.1
2,303,724	+		BBR_RS20070	0.73	-1.2
2,303,732	-		BBR_RS20070	0.74	+3.1
2,303,732	-		BBR_RS20070	0.74	-0.3
2,303,732	-		BBR_RS20070	0.74	+0.5
2,303,764	-		BBR_RS20070	0.78	+1.2
2,303,795	-		BBR_RS20070	0.81	-0.7
2,303,845	-		BBR_RS20070	0.87	+1.7
2,303,863	-		BBR_RS20070	0.89	-1.2
2,303,901	-				+0.5
2,303,920	-				+0.1
2,303,920	-				+1.3
2,303,949	+				-0.6
2,303,957	-				+0.7
2,303,957	-				-0.0
2,303,980	+				-1.3
2,303,985	+				+1.3
2,303,985	+				-1.7
2,303,985	+				+1.0
2,303,988	-				+1.1
2,303,993	-				+1.7
2,303,998	-				+0.9
2,304,011	+				-2.8
2,304,019	-				-1.8
2,304,068	+				-0.7
2,304,071	-				-1.8
2,304,076	-				+0.5
2,304,076	-				-1.2
2,304,076	-				+1.9
2,304,076	-				-2.4
2,304,076	-				+2.1
2,304,090	+				+2.2
2,304,098	-				-1.7
2,304,139	+				-0.4
2,304,145	-				+1.2
2,304,148	+				-3.1
2,304,205	+				+2.3
2,304,205	+				+0.1
2,304,213	-				-0.9
2,304,213	-				-2.2
2,304,213	-				+0.2
2,304,217	+				-0.8
2,304,217	+				+2.4
2,304,225	-				-1.4
2,304,269	-				-0.0
2,304,285	+				+1.4
2,304,318	-				-1.6
2,304,322	+				+1.5
2,304,325	-				-2.8
2,304,330	-				-0.1
2,304,330	-				-1.5
2,304,335	+				+0.4
2,304,335	-				+0.2
2,304,345	-				+0.7
2,304,349	+				-2.9
2,304,349	+				+1.6
2,304,387	-				-1.9
2,304,398	+				+1.0
2,304,398	+				-1.7
2,304,415	+				+2.1
2,304,416	-				-1.3
2,304,438	-		BBR_RS20075	0.11	+0.1
2,304,486	+		BBR_RS20075	0.16	+1.4
2,304,502	+		BBR_RS20075	0.17	-0.2
2,304,517	+		BBR_RS20075	0.19	+1.4
2,304,519	+		BBR_RS20075	0.19	-2.8
2,304,520	+		BBR_RS20075	0.19	+1.9
2,304,525	-		BBR_RS20075	0.20	-1.3
2,304,525	-		BBR_RS20075	0.20	-2.7
2,304,527	-		BBR_RS20075	0.20	+1.6
2,304,546	-		BBR_RS20075	0.22	-1.4
2,304,570	+		BBR_RS20075	0.24	-1.4
2,304,580	+		BBR_RS20075	0.25	-1.6
2,304,580	+		BBR_RS20075	0.25	-0.3
2,304,588	-		BBR_RS20075	0.26	+0.4
2,304,698	+		BBR_RS20075	0.37	+2.3
2,304,734	+		BBR_RS20075	0.40	-0.0
2,304,757	+		BBR_RS20075	0.42	-1.1
2,304,773	+		BBR_RS20075	0.44	-1.8
2,304,773	+		BBR_RS20075	0.44	-1.5
2,304,773	+		BBR_RS20075	0.44	-0.0
2,304,773	+		BBR_RS20075	0.44	+1.4
2,304,773	+		BBR_RS20075	0.44	-1.1
2,304,773	+		BBR_RS20075	0.44	-1.4
2,304,773	+		BBR_RS20075	0.44	+0.6
2,304,773	+		BBR_RS20075	0.44	+1.0
2,304,773	+		BBR_RS20075	0.44	+1.0
2,304,781	-		BBR_RS20075	0.45	-2.0
2,304,781	-		BBR_RS20075	0.45	+0.4
2,304,781	-		BBR_RS20075	0.45	-1.5
2,304,789	-		BBR_RS20075	0.46	-1.0
2,304,817	+		BBR_RS20075	0.48	-1.7
2,304,817	+		BBR_RS20075	0.48	+0.7
2,304,817	+		BBR_RS20075	0.48	-0.0
2,304,817	+		BBR_RS20075	0.48	-1.1
2,304,817	+		BBR_RS20075	0.48	-0.8
2,304,822	+		BBR_RS20075	0.49	+2.3
2,304,822	+		BBR_RS20075	0.49	-0.2
2,304,822	+		BBR_RS20075	0.49	-2.1
2,304,825	-		BBR_RS20075	0.49	+0.6
2,304,825	-		BBR_RS20075	0.49	+1.3
2,304,832	-		BBR_RS20075	0.50	+1.1
2,304,847	+		BBR_RS20075	0.51	-1.5
2,304,849	+		BBR_RS20075	0.52	-0.2
2,304,854	+		BBR_RS20075	0.52	-0.7
2,304,854	+		BBR_RS20075	0.52	+0.3
2,304,854	+		BBR_RS20075	0.52	-1.8
2,304,854	+		BBR_RS20075	0.52	-1.5
2,304,857	-		BBR_RS20075	0.52	-0.6
2,304,857	-		BBR_RS20075	0.52	+0.4
2,304,862	-		BBR_RS20075	0.53	-3.2
2,304,862	-		BBR_RS20075	0.53	+1.8
2,304,877	-		BBR_RS20075	0.54	-2.1
2,304,879	+		BBR_RS20075	0.54	-0.0
2,304,882	-		BBR_RS20075	0.55	+2.0
2,304,887	-		BBR_RS20075	0.55	+2.1
2,304,887	-		BBR_RS20075	0.55	-0.2
2,304,887	-		BBR_RS20075	0.55	-0.5
2,304,887	-		BBR_RS20075	0.55	-1.6
2,305,017	-		BBR_RS20075	0.68	+0.5
2,305,033	+		BBR_RS20075	0.70	-1.0
2,305,041	-		BBR_RS20075	0.70	+0.6
2,305,047	+		BBR_RS20075	0.71	-1.5
2,305,051	+		BBR_RS20075	0.71	-1.6
2,305,051	+		BBR_RS20075	0.71	-1.8
2,305,054	-		BBR_RS20075	0.72	-2.5
2,305,056	+		BBR_RS20075	0.72	+2.3
2,305,059	-		BBR_RS20075	0.72	-0.9
2,305,059	-		BBR_RS20075	0.72	+1.2
2,305,064	-		BBR_RS20075	0.73	+0.4
2,305,064	-		BBR_RS20075	0.73	+0.6
2,305,071	-		BBR_RS20075	0.73	+2.1
2,305,093	-		BBR_RS20075	0.76	+1.0
2,305,112	-		BBR_RS20075	0.77	-0.1
2,305,131	-		BBR_RS20075	0.79	+0.1
2,305,131	-		BBR_RS20075	0.79	-1.7
2,305,136	-		BBR_RS20075	0.80	+1.6
2,305,142	+		BBR_RS20075	0.80	-0.2
2,305,170	+		BBR_RS20075	0.83	-0.9
2,305,170	+		BBR_RS20075	0.83	+1.1
2,305,170	+		BBR_RS20075	0.83	-1.7
2,305,178	-		BBR_RS20075	0.84	-2.0
2,305,178	-		BBR_RS20075	0.84	-2.3
2,305,227	+		BBR_RS20075	0.89	+2.9
2,305,235	-		BBR_RS20075	0.89	+0.9
2,305,247	+				+1.1
2,305,255	-				+1.5
2,305,290	-				+1.3
2,305,299	+				-3.0
2,305,304	+				-0.4
2,305,327	-				+0.4
2,305,335	+				-2.1
2,305,340	+				+0.1
2,305,350	+				+1.9
2,305,407	-				-2.7
2,305,428	-				+1.3
2,305,436	-				-0.0
2,305,455	+				-2.5
2,305,458	+				-2.2
2,305,459	-				+1.1
2,305,465	+				-2.5
2,305,473	-				-0.5
2,305,473	-				+2.6
2,305,473	-				-1.1
2,305,495	+				-0.6
2,305,508	-				-1.8
2,305,539	-				-1.8
2,305,567	-				+0.4
2,305,582	-				-0.5
2,305,587	-				+0.6
2,305,604	+				-2.2
2,305,612	-				+0.8
2,305,617	-				+1.1
2,305,629	-				+2.2
2,305,630	-				+4.0
2,305,637	+				-2.3
2,305,639	-				+0.8
2,305,641	+				-1.7
2,305,645	-				+1.4
2,305,649	-				+1.1
2,305,649	-				+1.1
2,305,649	-				+2.0
2,305,649	-				-0.8
2,305,668	-				+0.9
2,305,676	-				+0.6
2,305,690	-		BBR_RS20080	0.10	-0.8
2,305,697	-		BBR_RS20080	0.11	+1.9
2,305,707	-		BBR_RS20080	0.12	-1.1
2,305,725	-		BBR_RS20080	0.13	-1.8
2,305,744	-		BBR_RS20080	0.14	+0.3
2,305,751	-		BBR_RS20080	0.15	+1.1
2,305,765	-		BBR_RS20080	0.16	-0.8
2,305,765	-		BBR_RS20080	0.16	-1.1
2,305,767	-		BBR_RS20080	0.16	+0.1
2,305,775	+		BBR_RS20080	0.17	-0.4
2,305,775	+		BBR_RS20080	0.17	+0.8
2,305,775	+		BBR_RS20080	0.17	+0.1
2,305,775	+		BBR_RS20080	0.17	-2.4
2,305,775	+		BBR_RS20080	0.17	-2.3
2,305,775	+		BBR_RS20080	0.17	-1.8
2,305,775	+		BBR_RS20080	0.17	-1.9
2,305,783	-		BBR_RS20080	0.17	+0.1
2,305,783	-		BBR_RS20080	0.17	-0.6
2,305,783	-		BBR_RS20080	0.17	+0.6
2,305,785	+		BBR_RS20080	0.18	-2.7
2,305,793	-		BBR_RS20080	0.18	+1.3
2,305,797	-		BBR_RS20080	0.18	+2.0
2,305,798	-		BBR_RS20080	0.18	-1.0
2,305,798	-		BBR_RS20080	0.18	-0.3
2,305,801	+		BBR_RS20080	0.19	-0.9
2,305,835	-		BBR_RS20080	0.21	-1.1
2,305,854	-		BBR_RS20080	0.23	+0.9
2,305,865	-		BBR_RS20080	0.23	-1.7
2,305,901	+		BBR_RS20080	0.26	-2.8
2,305,901	-		BBR_RS20080	0.26	+1.3
2,305,909	-		BBR_RS20080	0.27	+2.0
2,305,909	-		BBR_RS20080	0.27	+2.8
2,305,909	-		BBR_RS20080	0.27	+1.0
2,305,924	+		BBR_RS20080	0.28	+1.0
2,305,924	+		BBR_RS20080	0.28	-1.1
2,305,932	-		BBR_RS20080	0.28	+2.6
2,305,948	+		BBR_RS20080	0.30	-0.5
2,305,948	+		BBR_RS20080	0.30	-1.7
2,305,955	-		BBR_RS20080	0.30	+1.6
2,305,965	-		BBR_RS20080	0.31	+1.0
2,305,986	-		BBR_RS20080	0.32	+4.2
2,306,008	-		BBR_RS20080	0.34	+2.0
2,306,015	+		BBR_RS20080	0.35	-2.3
2,306,022	+		BBR_RS20080	0.35	-2.5
2,306,023	-		BBR_RS20080	0.35	-1.2
2,306,023	-		BBR_RS20080	0.35	-2.1
2,306,023	-		BBR_RS20080	0.35	-0.9
2,306,023	-		BBR_RS20080	0.35	+1.5
2,306,023	-		BBR_RS20080	0.35	-1.2
2,306,023	-		BBR_RS20080	0.35	-0.8
2,306,030	-		BBR_RS20080	0.36	-0.2
2,306,030	-		BBR_RS20080	0.36	-1.9
2,306,035	-		BBR_RS20080	0.36	-0.9
2,306,035	-		BBR_RS20080	0.36	+2.6
2,306,035	-		BBR_RS20080	0.36	-0.7
2,306,035	-		BBR_RS20080	0.36	+0.7
2,306,035	-		BBR_RS20080	0.36	+1.2
2,306,056	-		BBR_RS20080	0.38	-0.4
2,306,076	+		BBR_RS20080	0.39	-1.1
2,306,077	-		BBR_RS20080	0.39	+0.9
2,306,077	-		BBR_RS20080	0.39	+0.6
2,306,077	-		BBR_RS20080	0.39	+1.0
2,306,077	-		BBR_RS20080	0.39	+1.2
2,306,077	-		BBR_RS20080	0.39	-0.4
2,306,096	-		BBR_RS20080	0.41	+0.3
2,306,096	-		BBR_RS20080	0.41	+1.2
2,306,098	+		BBR_RS20080	0.41	+1.6
2,306,104	+		BBR_RS20080	0.41	+0.3
2,306,106	-		BBR_RS20080	0.41	+2.9
2,306,114	+		BBR_RS20080	0.42	-0.8
2,306,134	-		BBR_RS20080	0.43	+1.9
2,306,144	-		BBR_RS20080	0.44	+0.3
2,306,163	+		BBR_RS20080	0.46	-0.4
2,306,179	-		BBR_RS20080	0.47	+0.2
2,306,179	-		BBR_RS20080	0.47	+0.2
2,306,179	-		BBR_RS20080	0.47	-0.8
2,306,179	-		BBR_RS20080	0.47	-1.7
2,306,231	+		BBR_RS20080	0.51	-0.8
2,306,264	+		BBR_RS20080	0.53	-0.2
2,306,267	-		BBR_RS20080	0.53	+0.3
2,306,272	-		BBR_RS20080	0.54	+1.1
2,306,288	-		BBR_RS20080	0.55	-2.2
2,306,305	-		BBR_RS20080	0.56	+1.4