Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19305

Experiment: CDM1 without Phenylalanine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Phenylalanine
2,109,105	+		BBR_RS19295	0.88	+0.9
2,109,113	-		BBR_RS19295	0.89	+2.9
2,109,136	+		BBR_RS19295	0.90	+2.6
2,109,136	+		BBR_RS19295	0.90	-2.2
2,109,144	-		BBR_RS19295	0.90	+1.7
2,109,148	+				-0.7
2,109,163	-				+1.4
2,109,170	+				-0.4
2,109,170	+				+1.9
2,109,178	-				+1.0
2,109,190	+				-1.0
2,109,218	-				-1.2
2,109,218	-				+1.6
2,109,230	+				-0.6
2,109,230	+				-0.9
2,109,235	+				-1.0
2,109,235	+				-1.4
2,109,236	-				-0.2
2,109,238	-				-3.4
2,109,238	-				+1.8
2,109,238	-				-0.4
2,109,249	-				+0.6
2,109,259	-				-0.4
2,109,268	+				+2.6
2,109,276	-				-2.1
2,109,278	+				-1.7
2,109,282	+				+0.6
2,109,286	-				-1.8
2,109,304	-				-1.5
2,109,304	-				+0.4
2,109,304	-				-1.8
2,109,304	-				-1.2
2,109,310	-				-0.8
2,109,319	-				+0.2
2,109,321	+				+1.7
2,109,329	-				+1.2
2,109,333	-				+2.8
2,109,389	+				+0.5
2,109,391	+				+3.2
2,109,398	+				-1.3
2,109,398	+				+2.2
2,109,399	-				-0.5
2,109,406	-				-1.2
2,109,417	+				+0.2
2,109,449	-				-0.1
2,109,812	+				-3.1
2,109,820	-				+1.2
2,109,827	+				-2.4
2,109,829	+				+3.1
2,109,833	-				+1.8
2,109,837	-				-0.5
2,109,846	-				+0.2
2,109,846	-				+2.4
2,109,862	+				+0.7
2,109,862	+				+0.4
2,109,866	-				+2.0
2,109,866	-				-0.2
2,109,868	+				-1.0
2,109,868	+				+2.5
2,109,870	-				-2.4
2,109,870	-				+0.6
2,109,880	-				+0.8
2,109,880	-				+0.7
2,109,903	+				+1.0
2,109,978	-				-0.9
2,110,003	+				-2.5
2,110,011	-				-2.5
2,110,030	+				+1.3
2,110,049	+				-0.1
2,110,070	+				+2.6
2,110,118	+				-0.6
2,110,130	+				-0.7
2,110,133	+				-2.2
2,110,133	+				-1.8
2,110,133	-				+2.1
2,110,143	-				+1.8
2,110,159	+				-0.3
2,110,159	+				+0.2
2,110,167	-				-1.7
2,110,169	+				-2.7
2,110,169	+				+0.4
2,110,170	+				-0.1
2,110,172	-				-2.8
2,110,172	-				+0.0
2,110,177	-				-2.5
2,110,191	+				-1.2
2,110,199	+				+0.7
2,110,209	+		BBR_RS19305	0.10	-0.5
2,110,217	-		BBR_RS19305	0.11	+2.0
2,110,240	-		BBR_RS19305	0.13	-0.7
2,110,240	-		BBR_RS19305	0.13	+1.4
2,110,259	+		BBR_RS19305	0.15	-0.7
2,110,274	-		BBR_RS19305	0.17	-1.0
2,110,281	+		BBR_RS19305	0.17	-1.9
2,110,281	+		BBR_RS19305	0.17	+0.5
2,110,281	+		BBR_RS19305	0.17	+0.7
2,110,291	-		BBR_RS19305	0.18	-3.6
2,110,312	+		BBR_RS19305	0.20	+0.1
2,110,317	+		BBR_RS19305	0.21	+0.0
2,110,333	-		BBR_RS19305	0.22	+0.2
2,110,340	+		BBR_RS19305	0.23	-2.6
2,110,374	-		BBR_RS19305	0.26	+1.0
2,110,380	-		BBR_RS19305	0.27	-0.8
2,110,394	-		BBR_RS19305	0.28	-0.9
2,110,401	+		BBR_RS19305	0.29	-1.7
2,110,415	+		BBR_RS19305	0.30	-1.6
2,110,420	+		BBR_RS19305	0.31	-0.4
2,110,420	+		BBR_RS19305	0.31	+0.6
2,110,420	+		BBR_RS19305	0.31	-0.3
2,110,425	+		BBR_RS19305	0.31	-0.5
2,110,425	+		BBR_RS19305	0.31	-3.2
2,110,426	+		BBR_RS19305	0.32	+1.2
2,110,428	-		BBR_RS19305	0.32	-1.5
2,110,428	-		BBR_RS19305	0.32	-2.0
2,110,428	-		BBR_RS19305	0.32	-1.3
2,110,456	-		BBR_RS19305	0.35	-2.2
2,110,474	-		BBR_RS19305	0.36	-2.3
2,110,479	+		BBR_RS19305	0.37	+0.4
2,110,482	-		BBR_RS19305	0.37	-1.3
2,110,488	-		BBR_RS19305	0.38	-0.2
2,110,492	+		BBR_RS19305	0.38	-2.5
2,110,492	+		BBR_RS19305	0.38	+0.1
2,110,493	-		BBR_RS19305	0.38	+0.3
2,110,501	-		BBR_RS19305	0.39	-2.5
2,110,501	-		BBR_RS19305	0.39	+0.1
2,110,502	-		BBR_RS19305	0.39	-1.8
2,110,502	-		BBR_RS19305	0.39	-1.2
2,110,502	-		BBR_RS19305	0.39	+1.8
2,110,504	+		BBR_RS19305	0.39	+0.3
2,110,515	+		BBR_RS19305	0.40	-1.3
2,110,515	+		BBR_RS19305	0.40	+1.0
2,110,515	+		BBR_RS19305	0.40	+2.5
2,110,515	+		BBR_RS19305	0.40	-1.3
2,110,515	+		BBR_RS19305	0.40	-0.3
2,110,515	+		BBR_RS19305	0.40	-2.8
2,110,516	+		BBR_RS19305	0.40	+0.2
2,110,523	-		BBR_RS19305	0.41	+1.3
2,110,523	-		BBR_RS19305	0.41	+0.2
2,110,523	-		BBR_RS19305	0.41	-1.2
2,110,523	-		BBR_RS19305	0.41	+1.0
2,110,523	-		BBR_RS19305	0.41	-0.5
2,110,523	-		BBR_RS19305	0.41	-3.1
2,110,523	-		BBR_RS19305	0.41	-2.5
2,110,525	-		BBR_RS19305	0.41	-1.1
2,110,528	+		BBR_RS19305	0.42	+2.9
2,110,528	+		BBR_RS19305	0.42	-1.0
2,110,528	+		BBR_RS19305	0.42	-0.4
2,110,529	-		BBR_RS19305	0.42	-1.8
2,110,536	-		BBR_RS19305	0.42	-0.5
2,110,562	-		BBR_RS19305	0.45	+0.2
2,110,573	-		BBR_RS19305	0.46	-0.2
2,110,580	+		BBR_RS19305	0.47	-1.1
2,110,611	-		BBR_RS19305	0.50	-0.4
2,110,617	+		BBR_RS19305	0.50	-2.9
2,110,619	+		BBR_RS19305	0.51	-0.4
2,110,625	-		BBR_RS19305	0.51	-1.3
2,110,639	-		BBR_RS19305	0.53	-0.2
2,110,640	-		BBR_RS19305	0.53	-1.8
2,110,689	-		BBR_RS19305	0.57	-0.7
2,110,700	+		BBR_RS19305	0.59	-0.3
2,110,702	+		BBR_RS19305	0.59	-0.0
2,110,702	+		BBR_RS19305	0.59	-3.0
2,110,702	+		BBR_RS19305	0.59	+0.1
2,110,708	-		BBR_RS19305	0.59	-0.6
2,110,708	-		BBR_RS19305	0.59	+1.8
2,110,741	-		BBR_RS19305	0.63	+0.0
2,110,746	-		BBR_RS19305	0.63	-0.3
2,110,753	+		BBR_RS19305	0.64	-2.3
2,110,767	-		BBR_RS19305	0.65	+1.0
2,110,767	-		BBR_RS19305	0.65	-0.5
2,110,790	+		BBR_RS19305	0.67	-0.1
2,110,798	-		BBR_RS19305	0.68	+0.9
2,110,807	-		BBR_RS19305	0.69	-1.0
2,110,822	+		BBR_RS19305	0.71	+0.8
2,110,822	+		BBR_RS19305	0.71	-2.5
2,110,830	-		BBR_RS19305	0.71	+1.8
2,110,830	-		BBR_RS19305	0.71	-0.3
2,110,830	-		BBR_RS19305	0.71	+0.3
2,110,830	-		BBR_RS19305	0.71	+1.3
2,110,830	-		BBR_RS19305	0.71	+0.5
2,110,836	-		BBR_RS19305	0.72	-0.4
2,110,844	+		BBR_RS19305	0.73	-2.2
2,110,847	-		BBR_RS19305	0.73	-1.5
2,110,901	+		BBR_RS19305	0.78	-2.8
2,110,901	+		BBR_RS19305	0.78	-3.2
2,110,911	+		BBR_RS19305	0.79	-2.3
2,110,917	+		BBR_RS19305	0.80	-2.5
2,110,926	+		BBR_RS19305	0.81	-0.7
2,110,932	+		BBR_RS19305	0.81	-0.0
2,110,934	-		BBR_RS19305	0.82	-2.5
2,110,969	+		BBR_RS19305	0.85	-2.0
2,110,969	+		BBR_RS19305	0.85	+0.2
2,110,969	+		BBR_RS19305	0.85	-0.5
2,110,969	+		BBR_RS19305	0.85	+1.2
2,110,969	+		BBR_RS19305	0.85	+0.0
2,110,969	+		BBR_RS19305	0.85	-2.3
2,110,969	+		BBR_RS19305	0.85	-3.1
2,110,969	+		BBR_RS19305	0.85	+0.8
2,110,969	+		BBR_RS19305	0.85	-0.3
2,110,969	-		BBR_RS19305	0.85	-1.6
2,110,977	-		BBR_RS19305	0.86	-3.0
2,110,977	-		BBR_RS19305	0.86	+1.3
2,110,995	+		BBR_RS19305	0.88	+2.2
2,110,996	+		BBR_RS19305	0.88	-0.9
2,110,998	+		BBR_RS19305	0.88	-1.1
2,111,003	-		BBR_RS19305	0.88	-1.2
2,111,004	-		BBR_RS19305	0.88	-1.1
2,111,055	+				-0.5
2,111,055	+				-3.4
2,111,058	-				-1.0
2,111,069	+				-1.8
2,111,079	-				+0.2
2,111,079	-				-1.7
2,111,079	-				-1.5
2,111,086	+				-0.5
2,111,095	-				+1.1
2,111,100	-				+1.1
2,111,111	+				+1.3
2,111,121	-				-0.8
2,111,129	-				+1.9
2,111,152	+				-3.1
2,111,175	+				-0.2
2,111,193	-				+1.5
2,111,199	+				+0.5
2,111,201	-				-1.7
2,111,209	+				-2.1
2,111,209	-				-2.6
2,111,214	+				-0.9
2,111,223	-				+0.9
2,111,223	-				+0.4
2,111,223	-				+2.5
2,111,225	+				+1.1
2,111,226	-				-0.3
2,111,238	-				+1.2
2,111,244	-				-2.3
2,111,250	+				+3.3
2,111,253	-				+0.5
2,111,255	+				+1.6
2,111,260	-				+2.4
2,111,267	+				-1.5
2,111,268	-				-0.4
2,111,280	-				-1.9
2,111,298	-				-0.3
2,111,311	+				+0.4
2,111,372	-				+0.1
2,111,381	-				-3.5
2,111,383	+				-1.3
2,111,406	+		BBR_RS19310	0.10	+0.4
2,111,406	+		BBR_RS19310	0.10	+0.2
2,111,409	-		BBR_RS19310	0.10	+0.9
2,111,411	+		BBR_RS19310	0.10	-0.7
2,111,411	+		BBR_RS19310	0.10	+1.3
2,111,411	+		BBR_RS19310	0.10	+0.8
2,111,411	+		BBR_RS19310	0.10	-0.0
2,111,411	+		BBR_RS19310	0.10	-2.1
2,111,411	+		BBR_RS19310	0.10	-1.0
2,111,411	+		BBR_RS19310	0.10	+1.5
2,111,411	+		BBR_RS19310	0.10	-1.5
2,111,411	+		BBR_RS19310	0.10	-0.4
2,111,414	-		BBR_RS19310	0.11	-2.0
2,111,414	-		BBR_RS19310	0.11	+0.9
2,111,414	-		BBR_RS19310	0.11	-1.4
2,111,417	-		BBR_RS19310	0.11	-0.6
2,111,419	-		BBR_RS19310	0.11	-0.7
2,111,419	-		BBR_RS19310	0.11	+0.8
2,111,419	-		BBR_RS19310	0.11	-0.5
2,111,419	-		BBR_RS19310	0.11	-2.1
2,111,423	+		BBR_RS19310	0.11	-3.3
2,111,450	-		BBR_RS19310	0.13	-1.6
2,111,457	+		BBR_RS19310	0.14	-1.0
2,111,465	-		BBR_RS19310	0.15	+3.5
2,111,486	-		BBR_RS19310	0.16	-0.5
2,111,498	+		BBR_RS19310	0.17	+0.4
2,111,498	-		BBR_RS19310	0.17	-0.1
2,111,498	-		BBR_RS19310	0.17	+1.6
2,111,517	+		BBR_RS19310	0.19	+0.6
2,111,525	-		BBR_RS19310	0.19	+1.1
2,111,525	-		BBR_RS19310	0.19	+2.2
2,111,556	-		BBR_RS19310	0.22	-1.4
2,111,571	-		BBR_RS19310	0.23	+2.4
2,111,579	+		BBR_RS19310	0.23	+2.6
2,111,605	-		BBR_RS19310	0.25	-1.3
2,111,606	+		BBR_RS19310	0.25	+2.7
2,111,618	+		BBR_RS19310	0.26	-0.3
2,111,631	-		BBR_RS19310	0.27	-0.3
2,111,650	-		BBR_RS19310	0.29	-2.6
2,111,681	-		BBR_RS19310	0.31	+1.5
2,111,707	-		BBR_RS19310	0.33	-2.8
2,111,720	+		BBR_RS19310	0.34	+2.2
2,111,728	-		BBR_RS19310	0.35	-2.6
2,111,750	-		BBR_RS19310	0.36	-0.8
2,111,750	-		BBR_RS19310	0.36	-0.9
2,111,754	+		BBR_RS19310	0.37	-0.0
2,111,754	+		BBR_RS19310	0.37	+2.4
2,111,756	+		BBR_RS19310	0.37	+0.6
2,111,767	+		BBR_RS19310	0.38	-1.5
2,111,769	-		BBR_RS19310	0.38	-1.4
2,111,770	-		BBR_RS19310	0.38	-0.7
2,111,774	-		BBR_RS19310	0.38	-0.5
2,111,775	+		BBR_RS19310	0.38	+0.4
2,111,775	-		BBR_RS19310	0.38	-1.5
2,111,775	-		BBR_RS19310	0.38	-2.7
2,111,775	-		BBR_RS19310	0.38	+2.3
2,111,780	+		BBR_RS19310	0.39	-2.1
2,111,785	-		BBR_RS19310	0.39	-3.1
2,111,806	+		BBR_RS19310	0.41	+0.4
2,111,838	-		BBR_RS19310	0.43	-2.2
2,111,838	-		BBR_RS19310	0.43	-2.6
2,111,841	+		BBR_RS19310	0.43	-1.3
2,111,850	+		BBR_RS19310	0.44	-3.4
2,111,888	+		BBR_RS19310	0.47	-0.3
2,111,888	+		BBR_RS19310	0.47	-1.1
2,111,888	+		BBR_RS19310	0.47	+2.1
2,111,891	+		BBR_RS19310	0.47	+1.8
2,111,896	+		BBR_RS19310	0.48	+1.4
2,111,896	-		BBR_RS19310	0.48	-1.3
2,111,904	-		BBR_RS19310	0.48	+1.9
2,111,904	-		BBR_RS19310	0.48	-1.0
2,111,921	-		BBR_RS19310	0.50	-1.1
2,111,921	-		BBR_RS19310	0.50	+1.2
2,111,932	+		BBR_RS19310	0.50	+0.1
2,111,940	-		BBR_RS19310	0.51	-2.2
2,111,940	-		BBR_RS19310	0.51	-0.4
2,111,951	-		BBR_RS19310	0.52	-1.2
2,111,958	+		BBR_RS19310	0.52	-1.9
2,111,969	-		BBR_RS19310	0.53	+0.9
2,111,971	-		BBR_RS19310	0.53	+1.0
2,111,971	-		BBR_RS19310	0.53	-0.0
2,111,976	-		BBR_RS19310	0.54	-1.3
2,112,016	-		BBR_RS19310	0.57	-2.5
2,112,063	+		BBR_RS19310	0.61	-1.4
2,112,071	-		BBR_RS19310	0.61	-0.9
2,112,078	-		BBR_RS19310	0.62	+1.2
2,112,107	+		BBR_RS19310	0.64	+0.2
2,112,115	-		BBR_RS19310	0.65	-1.7
2,112,115	-		BBR_RS19310	0.65	-0.2
2,112,115	-		BBR_RS19310	0.65	-2.4