Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_698

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_696 and Ac3H11_697 overlap by 4 nucleotidesAc3H11_697 and Ac3H11_698 are separated by 18 nucleotidesAc3H11_698 and Ac3H11_699 are separated by 141 nucleotidesAc3H11_699 and Ac3H11_700 are separated by 3 nucleotides Ac3H11_696 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 53,161 to 54,024 _696 Ac3H11_697 - Dipeptide transport system permease protein DppB (TC 3.A.1.5.2), at 54,021 to 54,971 _697 Ac3H11_698 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2); Putative hemin-binding lipoprotein, at 54,990 to 56,576 _698 Ac3H11_699 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 56,718 to 57,107 _699 Ac3H11_700 - 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45), at 57,111 to 58,070 _700 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 54.061 kb on + strandat 54.062 kb on - strandat 54.094 kb on + strandat 54.095 kb on - strandat 54.095 kb on - strandat 54.095 kb on - strandat 54.243 kb on + strand, within Ac3H11_697at 54.244 kb on - strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.337 kb on + strand, within Ac3H11_697at 54.338 kb on - strand, within Ac3H11_697at 54.338 kb on - strand, within Ac3H11_697at 54.338 kb on - strand, within Ac3H11_697at 54.338 kb on - strand, within Ac3H11_697at 54.472 kb on + strand, within Ac3H11_697at 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.991 kb on + strandat 54.992 kb on - strandat 54.992 kb on - strandat 54.992 kb on - strandat 55.039 kb on + strandat 55.040 kb on - strandat 55.040 kb on - strandat 55.285 kb on + strand, within Ac3H11_698at 55.285 kb on + strand, within Ac3H11_698at 55.286 kb on - strand, within Ac3H11_698at 55.286 kb on - strand, within Ac3H11_698at 55.405 kb on + strand, within Ac3H11_698at 55.405 kb on + strand, within Ac3H11_698at 55.406 kb on - strand, within Ac3H11_698at 55.456 kb on + strand, within Ac3H11_698at 55.507 kb on + strand, within Ac3H11_698at 55.507 kb on + strand, within Ac3H11_698at 55.507 kb on + strand, within Ac3H11_698at 55.507 kb on + strand, within Ac3H11_698at 55.531 kb on + strand, within Ac3H11_698at 55.531 kb on + strand, within Ac3H11_698at 55.532 kb on - strand, within Ac3H11_698at 55.532 kb on - strand, within Ac3H11_698at 55.532 kb on - strand, within Ac3H11_698at 55.534 kb on + strand, within Ac3H11_698at 55.534 kb on + strand, within Ac3H11_698at 55.534 kb on + strand, within Ac3H11_698at 55.534 kb on + strand, within Ac3H11_698at 55.535 kb on - strand, within Ac3H11_698at 55.690 kb on + strand, within Ac3H11_698at 55.690 kb on + strand, within Ac3H11_698at 55.690 kb on + strand, within Ac3H11_698at 55.691 kb on - strand, within Ac3H11_698at 55.691 kb on - strand, within Ac3H11_698at 55.770 kb on + strand, within Ac3H11_698at 55.783 kb on + strand, within Ac3H11_698at 55.784 kb on - strand, within Ac3H11_698at 55.969 kb on + strand, within Ac3H11_698at 55.969 kb on + strand, within Ac3H11_698at 56.075 kb on - strand, within Ac3H11_698at 56.257 kb on + strand, within Ac3H11_698at 56.257 kb on + strand, within Ac3H11_698at 56.257 kb on + strand, within Ac3H11_698at 56.258 kb on - strand, within Ac3H11_698at 56.335 kb on + strand, within Ac3H11_698at 56.335 kb on + strand, within Ac3H11_698at 56.335 kb on + strand, within Ac3H11_698at 56.336 kb on - strand, within Ac3H11_698at 56.336 kb on - strand, within Ac3H11_698at 56.347 kb on + strand, within Ac3H11_698at 56.347 kb on + strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.348 kb on - strand, within Ac3H11_698at 56.725 kb on + strandat 56.726 kb on - strandat 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.997 kb on + strand, within Ac3H11_699at 56.998 kb on - strand, within Ac3H11_699at 56.998 kb on - strand, within Ac3H11_699at 57.091 kb on - strandat 57.202 kb on - strandat 57.202 kb on - strandat 57.202 kb on - strandat 57.273 kb on + strand, within Ac3H11_700at 57.273 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.387 kb on + strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.388 kb on - strand, within Ac3H11_700at 57.427 kb on - strand, within Ac3H11_700

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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54,061 + -1.0
54,062 - -0.2
54,094 + -2.5
54,095 - +0.5
54,095 - +1.9
54,095 - -1.9
54,243 + Ac3H11_697 0.23 -2.7
54,244 - Ac3H11_697 0.23 -1.0
54,337 + Ac3H11_697 0.33 +0.8
54,337 + Ac3H11_697 0.33 -0.6
54,337 + Ac3H11_697 0.33 -0.9
54,337 + Ac3H11_697 0.33 -1.3
54,337 + Ac3H11_697 0.33 -1.9
54,338 - Ac3H11_697 0.33 -3.5
54,338 - Ac3H11_697 0.33 +2.1
54,338 - Ac3H11_697 0.33 -0.4
54,338 - Ac3H11_697 0.33 -0.2
54,472 + Ac3H11_697 0.47 -2.2
54,991 + -1.6
54,991 + -1.6
54,991 + -2.5
54,991 + -1.6
54,991 + +0.7
54,991 + +2.6
54,991 + +0.8
54,991 + +1.0
54,991 + -2.8
54,992 - -2.6
54,992 - -1.3
54,992 - -1.8
55,039 + +0.5
55,040 - +2.7
55,040 - -1.6
55,285 + Ac3H11_698 0.19 +0.8
55,285 + Ac3H11_698 0.19 -0.4
55,286 - Ac3H11_698 0.19 -2.6
55,286 - Ac3H11_698 0.19 +0.8
55,405 + Ac3H11_698 0.26 -0.3
55,405 + Ac3H11_698 0.26 +1.3
55,406 - Ac3H11_698 0.26 +0.1
55,456 + Ac3H11_698 0.29 -0.7
55,507 + Ac3H11_698 0.33 +0.4
55,507 + Ac3H11_698 0.33 +2.0
55,507 + Ac3H11_698 0.33 -0.8
55,507 + Ac3H11_698 0.33 -0.8
55,531 + Ac3H11_698 0.34 +0.3
55,531 + Ac3H11_698 0.34 +1.1
55,532 - Ac3H11_698 0.34 -0.6
55,532 - Ac3H11_698 0.34 +0.3
55,532 - Ac3H11_698 0.34 +1.9
55,534 + Ac3H11_698 0.34 +1.5
55,534 + Ac3H11_698 0.34 -0.5
55,534 + Ac3H11_698 0.34 -1.8
55,534 + Ac3H11_698 0.34 +0.3
55,535 - Ac3H11_698 0.34 -2.2
55,690 + Ac3H11_698 0.44 +1.4
55,690 + Ac3H11_698 0.44 -0.3
55,690 + Ac3H11_698 0.44 -0.7
55,691 - Ac3H11_698 0.44 +0.1
55,691 - Ac3H11_698 0.44 +2.1
55,770 + Ac3H11_698 0.49 +0.1
55,783 + Ac3H11_698 0.50 +0.2
55,784 - Ac3H11_698 0.50 +0.5
55,969 + Ac3H11_698 0.62 +2.1
55,969 + Ac3H11_698 0.62 -1.9
56,075 - Ac3H11_698 0.68 -0.2
56,257 + Ac3H11_698 0.80 -3.4
56,257 + Ac3H11_698 0.80 -0.6
56,257 + Ac3H11_698 0.80 -0.4
56,258 - Ac3H11_698 0.80 -1.8
56,335 + Ac3H11_698 0.85 +0.8
56,335 + Ac3H11_698 0.85 +2.2
56,335 + Ac3H11_698 0.85 -1.6
56,336 - Ac3H11_698 0.85 -3.3
56,336 - Ac3H11_698 0.85 +0.1
56,347 + Ac3H11_698 0.86 +3.8
56,347 + Ac3H11_698 0.86 +1.4
56,348 - Ac3H11_698 0.86 -1.2
56,348 - Ac3H11_698 0.86 -1.9
56,348 - Ac3H11_698 0.86 +2.0
56,348 - Ac3H11_698 0.86 +0.5
56,348 - Ac3H11_698 0.86 -4.1
56,725 + -2.2
56,726 - -0.8
56,997 + Ac3H11_699 0.72 -1.8
56,997 + Ac3H11_699 0.72 +0.4
56,997 + Ac3H11_699 0.72 +1.0
56,997 + Ac3H11_699 0.72 +1.5
56,997 + Ac3H11_699 0.72 -2.3
56,997 + Ac3H11_699 0.72 -2.9
56,997 + Ac3H11_699 0.72 +0.4
56,997 + Ac3H11_699 0.72 +0.4
56,997 + Ac3H11_699 0.72 -2.3
56,997 + Ac3H11_699 0.72 -0.4
56,997 + Ac3H11_699 0.72 -2.3
56,998 - Ac3H11_699 0.72 -3.1
56,998 - Ac3H11_699 0.72 -1.6
57,091 - -2.8
57,202 - -2.1
57,202 - +1.8
57,202 - -1.1
57,273 + Ac3H11_700 0.17 +0.4
57,273 + Ac3H11_700 0.17 -1.3
57,387 + Ac3H11_700 0.29 -3.4
57,387 + Ac3H11_700 0.29 +1.8
57,387 + Ac3H11_700 0.29 +1.3
57,387 + Ac3H11_700 0.29 -1.4
57,387 + Ac3H11_700 0.29 -0.9
57,387 + Ac3H11_700 0.29 +0.6
57,387 + Ac3H11_700 0.29 -1.7
57,387 + Ac3H11_700 0.29 -1.8
57,387 + Ac3H11_700 0.29 +0.4
57,387 + Ac3H11_700 0.29 +1.7
57,388 - Ac3H11_700 0.29 -2.3
57,388 - Ac3H11_700 0.29 -1.2
57,388 - Ac3H11_700 0.29 -0.0
57,388 - Ac3H11_700 0.29 -0.4
57,388 - Ac3H11_700 0.29 +2.3
57,388 - Ac3H11_700 0.29 -3.4
57,427 - Ac3H11_700 0.33 -1.5

Or see this region's nucleotide sequence