Experiment: Paraquat dichloride 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4190 and Ac3H11_4191 are separated by 57 nucleotides Ac3H11_4191 and Ac3H11_4192 are separated by 282 nucleotides Ac3H11_4192 and Ac3H11_4193 are separated by 682 nucleotides
Ac3H11_4190 - Similar to ribosomal large subunit pseudouridine synthase A, at 448,514 to 449,431
_4190
Ac3H11_4191 - Alkaline phosphatase (EC 3.1.3.1), at 449,489 to 449,650
_4191
Ac3H11_4192 - hypothetical protein, at 449,933 to 450,337
_4192
Ac3H11_4193 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 451,020 to 454,256
_4193
Position (kb) 449
450
451 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 448.947 kb on + strand, within Ac3H11_4190 at 448.947 kb on + strand, within Ac3H11_4190 at 448.947 kb on + strand, within Ac3H11_4190 at 448.947 kb on + strand, within Ac3H11_4190 at 448.948 kb on - strand, within Ac3H11_4190 at 449.146 kb on - strand, within Ac3H11_4190 at 449.196 kb on + strand, within Ac3H11_4190 at 449.196 kb on + strand, within Ac3H11_4190 at 449.197 kb on - strand, within Ac3H11_4190 at 449.199 kb on + strand, within Ac3H11_4190 at 449.199 kb on + strand, within Ac3H11_4190 at 449.199 kb on + strand, within Ac3H11_4190 at 449.199 kb on + strand, within Ac3H11_4190 at 449.199 kb on + strand, within Ac3H11_4190 at 449.199 kb on + strand, within Ac3H11_4190 at 449.199 kb on + strand, within Ac3H11_4190 at 449.200 kb on - strand, within Ac3H11_4190 at 449.200 kb on - strand, within Ac3H11_4190 at 449.200 kb on - strand, within Ac3H11_4190 at 449.200 kb on - strand, within Ac3H11_4190 at 449.200 kb on - strand, within Ac3H11_4190 at 449.200 kb on - strand, within Ac3H11_4190 at 449.200 kb on - strand, within Ac3H11_4190 at 449.202 kb on + strand, within Ac3H11_4190 at 449.202 kb on + strand, within Ac3H11_4190 at 449.202 kb on + strand, within Ac3H11_4190 at 449.202 kb on + strand, within Ac3H11_4190 at 449.202 kb on + strand, within Ac3H11_4190 at 449.203 kb on - strand, within Ac3H11_4190 at 449.203 kb on - strand, within Ac3H11_4190 at 449.203 kb on - strand, within Ac3H11_4190 at 449.203 kb on - strand, within Ac3H11_4190 at 449.203 kb on - strand, within Ac3H11_4190 at 449.446 kb on - strand at 449.472 kb on + strand at 449.473 kb on - strand at 449.473 kb on - strand at 449.473 kb on - strand at 449.491 kb on - strand at 449.491 kb on - strand at 449.491 kb on - strand at 449.670 kb on + strand at 449.670 kb on + strand at 449.671 kb on - strand at 449.671 kb on - strand at 449.671 kb on - strand at 449.671 kb on - strand at 449.726 kb on - strand at 449.726 kb on - strand at 449.831 kb on - strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.874 kb on + strand at 449.875 kb on - strand at 449.875 kb on - strand at 449.875 kb on - strand at 449.875 kb on - strand at 449.875 kb on - strand at 449.875 kb on - strand at 449.875 kb on - strand at 449.875 kb on - strand at 449.875 kb on - strand at 449.916 kb on + strand at 449.918 kb on + strand at 449.919 kb on - strand at 449.919 kb on - strand at 449.919 kb on - strand at 449.934 kb on + strand at 449.935 kb on - strand at 449.935 kb on - strand at 450.103 kb on + strand, within Ac3H11_4192 at 450.103 kb on + strand, within Ac3H11_4192 at 450.103 kb on + strand, within Ac3H11_4192 at 450.103 kb on + strand, within Ac3H11_4192 at 450.103 kb on + strand, within Ac3H11_4192 at 450.103 kb on + strand, within Ac3H11_4192 at 450.103 kb on + strand, within Ac3H11_4192 at 450.104 kb on - strand, within Ac3H11_4192 at 450.104 kb on - strand, within Ac3H11_4192 at 450.104 kb on - strand, within Ac3H11_4192 at 450.104 kb on - strand, within Ac3H11_4192 at 450.104 kb on - strand, within Ac3H11_4192 at 450.244 kb on + strand, within Ac3H11_4192 at 450.339 kb on + strand at 450.339 kb on + strand at 450.339 kb on + strand at 450.339 kb on + strand at 450.339 kb on + strand at 450.339 kb on + strand at 450.340 kb on - strand at 450.340 kb on - strand at 450.340 kb on - strand at 450.340 kb on - strand at 450.340 kb on - strand at 450.340 kb on - strand at 450.361 kb on - strand at 450.441 kb on + strand at 450.441 kb on + strand at 450.442 kb on - strand at 450.442 kb on - strand at 450.455 kb on + strand at 450.455 kb on + strand at 450.455 kb on + strand at 450.455 kb on + strand at 450.456 kb on - strand at 450.456 kb on - strand at 450.456 kb on - strand at 450.456 kb on - strand at 450.456 kb on - strand at 450.456 kb on - strand at 450.457 kb on + strand at 450.457 kb on + strand at 450.457 kb on + strand at 450.457 kb on + strand at 450.457 kb on + strand at 450.457 kb on + strand at 450.457 kb on + strand at 450.458 kb on - strand at 450.458 kb on - strand at 450.458 kb on - strand at 450.458 kb on - strand at 450.458 kb on - strand at 450.458 kb on - strand at 450.458 kb on - strand at 450.458 kb on - strand at 450.458 kb on - strand at 450.504 kb on + strand at 450.504 kb on + strand at 450.513 kb on + strand at 450.514 kb on - strand at 450.514 kb on - strand at 450.566 kb on - strand at 450.566 kb on - strand at 450.566 kb on - strand at 450.566 kb on - strand at 450.566 kb on - strand at 450.651 kb on + strand at 450.651 kb on + strand at 450.651 kb on + strand at 450.652 kb on - strand at 450.652 kb on - strand at 450.652 kb on - strand at 450.710 kb on + strand at 450.710 kb on + strand at 450.710 kb on + strand at 450.711 kb on - strand at 450.840 kb on + strand at 450.840 kb on + strand at 450.841 kb on - strand at 450.851 kb on + strand at 450.851 kb on + strand at 450.852 kb on - strand at 450.894 kb on + strand at 450.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml remove 448,947 + Ac3H11_4190 0.47 +1.1 448,947 + Ac3H11_4190 0.47 -2.3 448,947 + Ac3H11_4190 0.47 +1.4 448,947 + Ac3H11_4190 0.47 -0.8 448,948 - Ac3H11_4190 0.47 +0.8 449,146 - Ac3H11_4190 0.69 -0.7 449,196 + Ac3H11_4190 0.74 +0.0 449,196 + Ac3H11_4190 0.74 -1.4 449,197 - Ac3H11_4190 0.74 -2.0 449,199 + Ac3H11_4190 0.75 +0.4 449,199 + Ac3H11_4190 0.75 +2.5 449,199 + Ac3H11_4190 0.75 +2.1 449,199 + Ac3H11_4190 0.75 -0.1 449,199 + Ac3H11_4190 0.75 +1.6 449,199 + Ac3H11_4190 0.75 -1.1 449,199 + Ac3H11_4190 0.75 -2.1 449,200 - Ac3H11_4190 0.75 -1.9 449,200 - Ac3H11_4190 0.75 -0.8 449,200 - Ac3H11_4190 0.75 +1.4 449,200 - Ac3H11_4190 0.75 +1.7 449,200 - Ac3H11_4190 0.75 +0.1 449,200 - Ac3H11_4190 0.75 +1.3 449,200 - Ac3H11_4190 0.75 +1.4 449,202 + Ac3H11_4190 0.75 +1.1 449,202 + Ac3H11_4190 0.75 +0.2 449,202 + Ac3H11_4190 0.75 -2.0 449,202 + Ac3H11_4190 0.75 +0.8 449,202 + Ac3H11_4190 0.75 +1.8 449,203 - Ac3H11_4190 0.75 -3.8 449,203 - Ac3H11_4190 0.75 -0.7 449,203 - Ac3H11_4190 0.75 +0.9 449,203 - Ac3H11_4190 0.75 +1.6 449,203 - Ac3H11_4190 0.75 +0.2 449,446 - +0.4 449,472 + +0.4 449,473 - -2.1 449,473 - -1.4 449,473 - -3.6 449,491 - -2.5 449,491 - -1.3 449,491 - -2.8 449,670 + +0.5 449,670 + +0.9 449,671 - -0.7 449,671 - -1.1 449,671 - +0.1 449,671 - -1.7 449,726 - -0.1 449,726 - +1.0 449,831 - +0.6 449,874 + -0.7 449,874 + +2.4 449,874 + +2.0 449,874 + +0.2 449,874 + +0.1 449,874 + -3.4 449,874 + +2.0 449,874 + +0.0 449,874 + +0.6 449,874 + +0.6 449,874 + +2.8 449,874 + -0.2 449,874 + +1.2 449,874 + +4.0 449,874 + -0.3 449,874 + +0.9 449,874 + -2.1 449,875 - -2.1 449,875 - -2.5 449,875 - +1.3 449,875 - +0.7 449,875 - -0.4 449,875 - +2.1 449,875 - +1.5 449,875 - -0.0 449,875 - -0.4 449,916 + +2.4 449,918 + +1.9 449,919 - +0.9 449,919 - +0.4 449,919 - -2.6 449,934 + +0.4 449,935 - +1.6 449,935 - +0.7 450,103 + Ac3H11_4192 0.42 +0.4 450,103 + Ac3H11_4192 0.42 +1.5 450,103 + Ac3H11_4192 0.42 -1.0 450,103 + Ac3H11_4192 0.42 +2.3 450,103 + Ac3H11_4192 0.42 -0.2 450,103 + Ac3H11_4192 0.42 -0.3 450,103 + Ac3H11_4192 0.42 +0.2 450,104 - Ac3H11_4192 0.42 +0.4 450,104 - Ac3H11_4192 0.42 -1.7 450,104 - Ac3H11_4192 0.42 -0.3 450,104 - Ac3H11_4192 0.42 +3.5 450,104 - Ac3H11_4192 0.42 +0.1 450,244 + Ac3H11_4192 0.77 +0.3 450,339 + +1.4 450,339 + -2.8 450,339 + +0.7 450,339 + +0.8 450,339 + +1.0 450,339 + +0.8 450,340 - +1.8 450,340 - +0.1 450,340 - +1.7 450,340 - -0.1 450,340 - +1.5 450,340 - +1.1 450,361 - +0.4 450,441 + +0.1 450,441 + +0.7 450,442 - -2.0 450,442 - -3.0 450,455 + -2.1 450,455 + +0.5 450,455 + +0.8 450,455 + -0.0 450,456 - +3.0 450,456 - -0.0 450,456 - -0.6 450,456 - +1.7 450,456 - +0.8 450,456 - +0.1 450,457 + +1.9 450,457 + +1.4 450,457 + -2.0 450,457 + -0.8 450,457 + -1.0 450,457 + -2.3 450,457 + +1.4 450,458 - -0.6 450,458 - +1.6 450,458 - -0.2 450,458 - -0.8 450,458 - -2.8 450,458 - -0.0 450,458 - +0.9 450,458 - +0.6 450,458 - -0.1 450,504 + -2.0 450,504 + -4.1 450,513 + -2.1 450,514 - +1.4 450,514 - +0.6 450,566 - +0.8 450,566 - +2.2 450,566 - -2.0 450,566 - +0.1 450,566 - +1.4 450,651 + -0.3 450,651 + -0.9 450,651 + +1.4 450,652 - +0.1 450,652 - -3.6 450,652 - +0.1 450,710 + +3.3 450,710 + +1.2 450,710 + +0.7 450,711 - -0.8 450,840 + +1.9 450,840 + -1.6 450,841 - +1.4 450,851 + -2.0 450,851 + +1.5 450,852 - +0.5 450,894 + -0.6 450,895 - +3.0
Or see this region's nucleotide sequence