Experiment: Paraquat dichloride 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_375 and Ac3H11_376 are separated by 301 nucleotides Ac3H11_376 and Ac3H11_564 are separated by 16 nucleotides Ac3H11_564 and Ac3H11_377 are separated by 63 nucleotides Ac3H11_377 and Ac3H11_565 are separated by 48 nucleotides
Ac3H11_375 - Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83), at 50,604 to 51,698
_375
Ac3H11_376 - DNA-binding protein HU-beta, at 52,000 to 52,272
_376
Ac3H11_564 - tRNA-Val-TAC, at 52,289 to 52,361
_564
Ac3H11_377 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 52,425 to 54,353
_377
Ac3H11_565 - tRNA-His-GTG, at 54,402 to 54,474
_565
Position (kb) 52
53
54
55 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 51.739 kb on + strand at 51.739 kb on + strand at 51.790 kb on + strand at 51.791 kb on - strand at 51.796 kb on + strand at 51.834 kb on + strand at 51.834 kb on + strand at 51.834 kb on + strand at 51.889 kb on - strand at 51.889 kb on - strand at 52.191 kb on + strand, within Ac3H11_376 at 54.710 kb on + strand at 54.754 kb on + strand at 54.755 kb on - strand at 54.766 kb on + strand at 54.767 kb on - strand at 54.767 kb on - strand at 54.791 kb on - strand at 54.795 kb on + strand at 54.795 kb on + strand at 54.795 kb on + strand at 54.795 kb on + strand at 54.796 kb on - strand at 54.796 kb on - strand at 54.796 kb on - strand at 54.796 kb on - strand at 54.796 kb on - strand at 54.796 kb on - strand at 54.796 kb on - strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.929 kb on + strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.930 kb on - strand at 54.935 kb on + strand at 54.935 kb on + strand at 54.935 kb on + strand at 54.935 kb on + strand at 54.936 kb on - strand at 54.936 kb on - strand at 54.936 kb on - strand at 55.102 kb on + strand at 55.102 kb on + strand at 55.102 kb on + strand at 55.102 kb on + strand at 55.102 kb on + strand at 55.102 kb on + strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.103 kb on - strand at 55.104 kb on + strand at 55.145 kb on + strand at 55.213 kb on + strand at 55.213 kb on + strand at 55.213 kb on + strand at 55.213 kb on + strand at 55.213 kb on + strand at 55.213 kb on + strand at 55.214 kb on - strand at 55.214 kb on - strand at 55.214 kb on - strand at 55.214 kb on - strand at 55.214 kb on - strand at 55.214 kb on - strand at 55.215 kb on + strand at 55.216 kb on - strand at 55.305 kb on + strand at 55.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml remove 51,739 + +0.8 51,739 + -1.7 51,790 + +2.5 51,791 - -0.6 51,796 + +0.1 51,834 + +1.6 51,834 + -0.6 51,834 + +2.3 51,889 - -1.4 51,889 - -2.6 52,191 + Ac3H11_376 0.70 -0.3 54,710 + +0.6 54,754 + +0.7 54,755 - +0.9 54,766 + -0.5 54,767 - +2.8 54,767 - -4.0 54,791 - +2.3 54,795 + +0.3 54,795 + -2.8 54,795 + +0.5 54,795 + +0.8 54,796 - +0.6 54,796 - -1.6 54,796 - +1.0 54,796 - +0.2 54,796 - +1.5 54,796 - -2.1 54,796 - -0.7 54,929 + +0.2 54,929 + +2.1 54,929 + +1.8 54,929 + -0.7 54,929 + -1.5 54,929 + +3.1 54,929 + -2.2 54,929 + +0.8 54,929 + +2.1 54,930 - -1.6 54,930 - +2.0 54,930 - -0.1 54,930 - +0.0 54,930 - +1.0 54,935 + +0.7 54,935 + +0.0 54,935 + +0.8 54,935 + -0.4 54,936 - +0.8 54,936 - +1.4 54,936 - -0.8 55,102 + +0.2 55,102 + -0.9 55,102 + +0.3 55,102 + +0.9 55,102 + +0.8 55,102 + +0.3 55,103 - -0.2 55,103 - -2.9 55,103 - -0.9 55,103 - -1.8 55,103 - -0.0 55,103 - +1.4 55,103 - +0.7 55,103 - -1.2 55,103 - +2.1 55,104 + +1.2 55,145 + +0.0 55,213 + -2.4 55,213 + +0.1 55,213 + -1.9 55,213 + +0.8 55,213 + +0.2 55,213 + -2.6 55,214 - -3.5 55,214 - +2.0 55,214 - +1.6 55,214 - -0.2 55,214 - -2.1 55,214 - +2.0 55,215 + -2.1 55,216 - +0.2 55,305 + -0.0 55,306 - +0.4
Or see this region's nucleotide sequence