Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3605

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3604 and Ac3H11_3605 are separated by 348 nucleotidesAc3H11_3605 and Ac3H11_3606 are separated by 152 nucleotidesAc3H11_3606 and Ac3H11_3607 overlap by 23 nucleotides Ac3H11_3604 - Probable sensor histidine kinase protein (EC 2.7.3.-), at 156,543 to 159,020 _3604 Ac3H11_3605 - FIG00349159: hypothetical protein, at 159,369 to 159,539 _3605 Ac3H11_3606 - Mlr1171 protein, at 159,692 to 160,294 _3606 Ac3H11_3607 - Metallo-beta-lactamase superfamily protein, at 160,272 to 161,240 _3607 Position (kb) 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 158.417 kb on - strand, within Ac3H11_3604at 158.417 kb on - strand, within Ac3H11_3604at 158.922 kb on + strandat 158.922 kb on + strandat 158.922 kb on + strandat 158.923 kb on - strandat 158.923 kb on - strandat 158.923 kb on - strandat 158.923 kb on - strandat 158.923 kb on - strandat 158.923 kb on - strandat 159.018 kb on + strandat 159.134 kb on + strandat 159.177 kb on + strandat 159.178 kb on - strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.279 kb on + strandat 159.472 kb on + strand, within Ac3H11_3605at 159.488 kb on + strand, within Ac3H11_3605at 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.542 kb on + strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.543 kb on - strandat 159.576 kb on + strandat 159.995 kb on + strand, within Ac3H11_3606at 159.995 kb on + strand, within Ac3H11_3606at 159.996 kb on - strand, within Ac3H11_3606at 160.492 kb on + strand, within Ac3H11_3607at 160.492 kb on + strand, within Ac3H11_3607at 160.493 kb on - strand, within Ac3H11_3607at 160.493 kb on - strand, within Ac3H11_3607at 160.493 kb on - strand, within Ac3H11_3607

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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158,417 - Ac3H11_3604 0.76 -0.8
158,417 - Ac3H11_3604 0.76 +1.5
158,922 + -3.1
158,922 + -2.9
158,922 + -2.4
158,923 - -0.4
158,923 - -0.1
158,923 - -0.3
158,923 - +0.7
158,923 - +0.2
158,923 - -0.3
159,018 + +1.2
159,134 + -2.3
159,177 + +1.1
159,178 - +1.3
159,279 + -0.7
159,279 + +0.2
159,279 + -0.8
159,279 + -0.8
159,279 + -0.5
159,472 + Ac3H11_3605 0.60 +0.9
159,488 + Ac3H11_3605 0.70 +1.3
159,542 + +1.0
159,542 + +1.4
159,542 + -1.3
159,542 + -2.0
159,542 + -0.0
159,542 + -3.5
159,542 + +0.8
159,543 - -2.1
159,543 - -0.8
159,543 - -0.7
159,543 - +1.3
159,543 - +2.0
159,543 - -1.3
159,543 - +1.8
159,543 - +1.5
159,543 - -1.1
159,576 + -0.7
159,995 + Ac3H11_3606 0.50 -0.9
159,995 + Ac3H11_3606 0.50 -1.2
159,996 - Ac3H11_3606 0.50 +1.1
160,492 + Ac3H11_3607 0.23 -1.0
160,492 + Ac3H11_3607 0.23 -2.3
160,493 - Ac3H11_3607 0.23 -0.5
160,493 - Ac3H11_3607 0.23 -0.4
160,493 - Ac3H11_3607 0.23 -0.1

Or see this region's nucleotide sequence