Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_307

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_306 and Ac3H11_307 are separated by 12 nucleotidesAc3H11_307 and Ac3H11_308 are separated by 6 nucleotides Ac3H11_306 - Epoxyqueuosine (oQ) reductase QueG, at 127,444 to 128,490 _306 Ac3H11_307 - TsaE protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA, at 128,503 to 129,021 _307 Ac3H11_308 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 129,028 to 130,491 _308 Position (kb) 128 129 130Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.769 kb on + strand, within Ac3H11_306at 127.770 kb on - strand, within Ac3H11_306at 127.770 kb on - strand, within Ac3H11_306at 127.770 kb on - strand, within Ac3H11_306at 127.770 kb on - strand, within Ac3H11_306at 127.835 kb on + strand, within Ac3H11_306at 127.835 kb on + strand, within Ac3H11_306at 127.835 kb on + strand, within Ac3H11_306at 127.835 kb on + strand, within Ac3H11_306at 127.836 kb on - strand, within Ac3H11_306at 127.836 kb on - strand, within Ac3H11_306at 127.836 kb on - strand, within Ac3H11_306at 127.836 kb on - strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.967 kb on + strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 127.968 kb on - strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.171 kb on + strand, within Ac3H11_306at 128.172 kb on - strand, within Ac3H11_306at 128.172 kb on - strand, within Ac3H11_306at 128.189 kb on + strand, within Ac3H11_306at 128.189 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.285 kb on + strand, within Ac3H11_306at 128.286 kb on - strand, within Ac3H11_306at 128.286 kb on - strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.369 kb on + strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.370 kb on - strand, within Ac3H11_306at 128.535 kb on - strandat 128.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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127,769 + Ac3H11_306 0.31 -0.3
127,769 + Ac3H11_306 0.31 +0.6
127,769 + Ac3H11_306 0.31 -4.0
127,769 + Ac3H11_306 0.31 -0.1
127,769 + Ac3H11_306 0.31 -1.9
127,769 + Ac3H11_306 0.31 +0.7
127,769 + Ac3H11_306 0.31 +2.4
127,770 - Ac3H11_306 0.31 -1.5
127,770 - Ac3H11_306 0.31 -1.4
127,770 - Ac3H11_306 0.31 +1.1
127,770 - Ac3H11_306 0.31 +1.4
127,835 + Ac3H11_306 0.37 +0.1
127,835 + Ac3H11_306 0.37 -0.6
127,835 + Ac3H11_306 0.37 -2.6
127,835 + Ac3H11_306 0.37 +0.9
127,836 - Ac3H11_306 0.37 +0.7
127,836 - Ac3H11_306 0.37 -2.1
127,836 - Ac3H11_306 0.37 -3.1
127,836 - Ac3H11_306 0.37 +2.3
127,967 + Ac3H11_306 0.50 +0.1
127,967 + Ac3H11_306 0.50 +0.1
127,967 + Ac3H11_306 0.50 -1.0
127,967 + Ac3H11_306 0.50 +0.2
127,967 + Ac3H11_306 0.50 -1.1
127,967 + Ac3H11_306 0.50 +2.2
127,967 + Ac3H11_306 0.50 +1.5
127,967 + Ac3H11_306 0.50 -1.4
127,967 + Ac3H11_306 0.50 +1.7
127,967 + Ac3H11_306 0.50 +2.8
127,967 + Ac3H11_306 0.50 +1.3
127,967 + Ac3H11_306 0.50 +1.7
127,967 + Ac3H11_306 0.50 +1.3
127,968 - Ac3H11_306 0.50 +0.0
127,968 - Ac3H11_306 0.50 +0.0
127,968 - Ac3H11_306 0.50 +0.8
127,968 - Ac3H11_306 0.50 -1.6
127,968 - Ac3H11_306 0.50 -1.0
127,968 - Ac3H11_306 0.50 -3.8
127,968 - Ac3H11_306 0.50 -0.4
127,968 - Ac3H11_306 0.50 +1.8
127,968 - Ac3H11_306 0.50 -0.1
127,968 - Ac3H11_306 0.50 +0.7
127,968 - Ac3H11_306 0.50 +1.6
127,968 - Ac3H11_306 0.50 +0.5
127,968 - Ac3H11_306 0.50 -0.8
127,968 - Ac3H11_306 0.50 +0.7
127,968 - Ac3H11_306 0.50 +0.4
127,968 - Ac3H11_306 0.50 +1.8
128,171 + Ac3H11_306 0.69 +0.1
128,171 + Ac3H11_306 0.69 -3.2
128,171 + Ac3H11_306 0.69 -2.2
128,171 + Ac3H11_306 0.69 -0.9
128,171 + Ac3H11_306 0.69 +1.0
128,172 - Ac3H11_306 0.70 -0.9
128,172 - Ac3H11_306 0.70 +0.2
128,189 + Ac3H11_306 0.71 -1.3
128,189 + Ac3H11_306 0.71 -1.4
128,285 + Ac3H11_306 0.80 +2.4
128,285 + Ac3H11_306 0.80 -0.1
128,285 + Ac3H11_306 0.80 +1.5
128,285 + Ac3H11_306 0.80 -2.8
128,285 + Ac3H11_306 0.80 +0.1
128,286 - Ac3H11_306 0.80 -1.9
128,286 - Ac3H11_306 0.80 -2.1
128,369 + Ac3H11_306 0.88 +1.0
128,369 + Ac3H11_306 0.88 -0.7
128,369 + Ac3H11_306 0.88 +1.5
128,369 + Ac3H11_306 0.88 -4.1
128,369 + Ac3H11_306 0.88 -1.2
128,369 + Ac3H11_306 0.88 -1.9
128,369 + Ac3H11_306 0.88 -0.6
128,369 + Ac3H11_306 0.88 -3.1
128,369 + Ac3H11_306 0.88 +1.5
128,369 + Ac3H11_306 0.88 +2.0
128,369 + Ac3H11_306 0.88 -1.6
128,369 + Ac3H11_306 0.88 -0.9
128,369 + Ac3H11_306 0.88 -1.3
128,369 + Ac3H11_306 0.88 -3.3
128,369 + Ac3H11_306 0.88 -2.3
128,369 + Ac3H11_306 0.88 -1.0
128,370 - Ac3H11_306 0.88 +0.9
128,370 - Ac3H11_306 0.88 -0.7
128,370 - Ac3H11_306 0.88 +1.5
128,370 - Ac3H11_306 0.88 -1.2
128,370 - Ac3H11_306 0.88 +0.4
128,370 - Ac3H11_306 0.88 +0.2
128,370 - Ac3H11_306 0.88 +1.1
128,370 - Ac3H11_306 0.88 -3.1
128,370 - Ac3H11_306 0.88 -0.6
128,370 - Ac3H11_306 0.88 -0.5
128,370 - Ac3H11_306 0.88 -1.1
128,370 - Ac3H11_306 0.88 -0.3
128,370 - Ac3H11_306 0.88 -1.8
128,370 - Ac3H11_306 0.88 +2.3
128,370 - Ac3H11_306 0.88 -0.5
128,370 - Ac3H11_306 0.88 +1.3
128,370 - Ac3H11_306 0.88 -0.2
128,370 - Ac3H11_306 0.88 +0.2
128,370 - Ac3H11_306 0.88 -2.9
128,370 - Ac3H11_306 0.88 +1.3
128,370 - Ac3H11_306 0.88 -3.4
128,370 - Ac3H11_306 0.88 +2.9
128,370 - Ac3H11_306 0.88 +0.6
128,370 - Ac3H11_306 0.88 -1.4
128,370 - Ac3H11_306 0.88 -0.9
128,370 - Ac3H11_306 0.88 +2.7
128,370 - Ac3H11_306 0.88 +0.9
128,370 - Ac3H11_306 0.88 +0.1
128,370 - Ac3H11_306 0.88 +0.0
128,370 - Ac3H11_306 0.88 +0.4
128,370 - Ac3H11_306 0.88 +2.4
128,370 - Ac3H11_306 0.88 +1.5
128,370 - Ac3H11_306 0.88 -0.6
128,370 - Ac3H11_306 0.88 -1.9
128,370 - Ac3H11_306 0.88 +1.7
128,370 - Ac3H11_306 0.88 -2.4
128,535 - +1.3
128,535 - -1.1

Or see this region's nucleotide sequence