Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2554

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2552 and Ac3H11_2553 are separated by 61 nucleotidesAc3H11_2553 and Ac3H11_2554 overlap by 4 nucleotidesAc3H11_2554 and Ac3H11_2555 are separated by 34 nucleotidesAc3H11_2555 and Ac3H11_2556 are separated by 31 nucleotides Ac3H11_2552 - Phytanoyl-CoA dioxygenase, at 829,900 to 830,793 _2552 Ac3H11_2553 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 830,855 to 831,652 _2553 Ac3H11_2554 - ABC transporter for L-Histidine, permease component 1 (from data), at 831,649 to 832,317 _2554 Ac3H11_2555 - ABC transporter for L-Histidine, periplasmic substrate-binding component 1 (from data), at 832,352 to 833,101 _2555 Ac3H11_2556 - Transcriptional regulator, IclR family, at 833,133 to 833,909 _2556 Position (kb) 831 832 833Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 830.779 kb on + strandat 831.728 kb on + strand, within Ac3H11_2554at 831.728 kb on + strand, within Ac3H11_2554at 831.728 kb on + strand, within Ac3H11_2554at 831.729 kb on - strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.022 kb on + strand, within Ac3H11_2554at 832.142 kb on + strand, within Ac3H11_2554at 832.325 kb on + strandat 832.325 kb on + strandat 832.326 kb on - strandat 832.353 kb on + strandat 832.353 kb on + strandat 832.353 kb on + strandat 832.354 kb on - strandat 832.398 kb on + strandat 832.398 kb on + strandat 832.398 kb on + strandat 832.398 kb on + strandat 832.399 kb on - strandat 832.482 kb on + strand, within Ac3H11_2555at 832.482 kb on + strand, within Ac3H11_2555at 832.482 kb on + strand, within Ac3H11_2555at 832.483 kb on - strand, within Ac3H11_2555at 832.539 kb on + strand, within Ac3H11_2555at 832.540 kb on - strand, within Ac3H11_2555at 832.540 kb on - strand, within Ac3H11_2555at 832.540 kb on - strand, within Ac3H11_2555at 832.663 kb on - strand, within Ac3H11_2555at 832.663 kb on - strand, within Ac3H11_2555at 832.663 kb on - strand, within Ac3H11_2555at 832.776 kb on + strand, within Ac3H11_2555at 832.776 kb on + strand, within Ac3H11_2555at 832.776 kb on + strand, within Ac3H11_2555at 832.777 kb on - strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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830,779 + +0.5
831,728 + Ac3H11_2554 0.12 +0.7
831,728 + Ac3H11_2554 0.12 -1.7
831,728 + Ac3H11_2554 0.12 -3.1
831,729 - Ac3H11_2554 0.12 +0.5
831,749 + Ac3H11_2554 0.15 +0.1
831,749 + Ac3H11_2554 0.15 -0.3
831,749 + Ac3H11_2554 0.15 -0.8
831,749 + Ac3H11_2554 0.15 +0.4
831,749 + Ac3H11_2554 0.15 -1.7
832,010 + Ac3H11_2554 0.54 +0.5
832,010 + Ac3H11_2554 0.54 +2.2
832,010 + Ac3H11_2554 0.54 +0.8
832,010 + Ac3H11_2554 0.54 +2.1
832,010 + Ac3H11_2554 0.54 +0.3
832,011 - Ac3H11_2554 0.54 +0.7
832,011 - Ac3H11_2554 0.54 -1.0
832,011 - Ac3H11_2554 0.54 -0.8
832,011 - Ac3H11_2554 0.54 -1.2
832,011 - Ac3H11_2554 0.54 +1.4
832,022 + Ac3H11_2554 0.56 +0.0
832,142 + Ac3H11_2554 0.74 +1.1
832,325 + +1.0
832,325 + -1.6
832,326 - -0.9
832,353 + +0.6
832,353 + -0.4
832,353 + +1.3
832,354 - -1.4
832,398 + +0.6
832,398 + +2.3
832,398 + -1.0
832,398 + -0.6
832,399 - +0.2
832,482 + Ac3H11_2555 0.17 +0.7
832,482 + Ac3H11_2555 0.17 +0.8
832,482 + Ac3H11_2555 0.17 -0.4
832,483 - Ac3H11_2555 0.17 +0.1
832,539 + Ac3H11_2555 0.25 +0.5
832,540 - Ac3H11_2555 0.25 -0.6
832,540 - Ac3H11_2555 0.25 +1.4
832,540 - Ac3H11_2555 0.25 +0.3
832,663 - Ac3H11_2555 0.41 +2.2
832,663 - Ac3H11_2555 0.41 -1.3
832,663 - Ac3H11_2555 0.41 -2.2
832,776 + Ac3H11_2555 0.57 -3.8
832,776 + Ac3H11_2555 0.57 -1.8
832,776 + Ac3H11_2555 0.57 -3.6
832,777 - Ac3H11_2555 0.57 -2.1
832,821 + Ac3H11_2555 0.63 +1.0
832,821 + Ac3H11_2555 0.63 +1.0
832,821 + Ac3H11_2555 0.63 +1.8
832,821 + Ac3H11_2555 0.63 -0.5
832,821 + Ac3H11_2555 0.63 +0.3
832,821 + Ac3H11_2555 0.63 -1.8
832,821 + Ac3H11_2555 0.63 -0.9
832,822 - Ac3H11_2555 0.63 -2.1
832,822 - Ac3H11_2555 0.63 +1.1
832,822 - Ac3H11_2555 0.63 +0.0
832,822 - Ac3H11_2555 0.63 +3.1
832,822 - Ac3H11_2555 0.63 +0.7
832,822 - Ac3H11_2555 0.63 -0.9
832,822 - Ac3H11_2555 0.63 -0.6
832,822 - Ac3H11_2555 0.63 +0.6
832,822 - Ac3H11_2555 0.63 +1.2

Or see this region's nucleotide sequence