Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2460

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2458 and Ac3H11_2459 are separated by 121 nucleotidesAc3H11_2459 and Ac3H11_2460 overlap by 38 nucleotidesAc3H11_2460 and Ac3H11_2461 overlap by 1 nucleotidesAc3H11_2461 and Ac3H11_2462 are separated by 155 nucleotides Ac3H11_2458 - DNA polymerase III alpha subunit (EC 2.7.7.7), at 719,698 to 723,312 _2458 Ac3H11_2459 - Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB), at 723,434 to 724,231 _2459 Ac3H11_2460 - DinG family ATP-dependent helicase YoaA, at 724,194 to 726,254 _2460 Ac3H11_2461 - hypothetical protein, at 726,254 to 726,409 _2461 Ac3H11_2462 - Protein phosphatase 2C-like, at 726,565 to 727,371 _2462 Position (kb) 724 725 726 727Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 723.248 kb on + strandat 723.248 kb on + strandat 723.248 kb on + strandat 723.248 kb on + strandat 723.248 kb on + strandat 723.248 kb on + strandat 723.248 kb on + strandat 723.248 kb on + strandat 723.248 kb on + strandat 723.249 kb on - strandat 723.249 kb on - strandat 723.316 kb on + strandat 723.316 kb on + strandat 723.316 kb on + strandat 723.316 kb on + strandat 723.316 kb on + strandat 723.316 kb on + strandat 723.316 kb on + strandat 723.316 kb on + strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 723.317 kb on - strandat 724.178 kb on + strandat 724.179 kb on - strandat 724.179 kb on - strandat 724.229 kb on + strandat 724.229 kb on + strandat 724.230 kb on - strandat 724.230 kb on - strandat 724.429 kb on + strand, within Ac3H11_2460at 724.429 kb on + strand, within Ac3H11_2460at 724.429 kb on + strand, within Ac3H11_2460at 724.429 kb on + strand, within Ac3H11_2460at 724.429 kb on + strand, within Ac3H11_2460at 724.429 kb on + strand, within Ac3H11_2460at 724.429 kb on + strand, within Ac3H11_2460at 724.429 kb on + strand, within Ac3H11_2460at 724.429 kb on + strand, within Ac3H11_2460at 724.430 kb on - strand, within Ac3H11_2460at 724.430 kb on - strand, within Ac3H11_2460at 724.430 kb on - strand, within Ac3H11_2460at 724.430 kb on - strand, within Ac3H11_2460at 724.430 kb on - strand, within Ac3H11_2460at 724.430 kb on - strand, within Ac3H11_2460at 724.430 kb on - strand, within Ac3H11_2460at 724.430 kb on - strand, within Ac3H11_2460at 724.855 kb on + strand, within Ac3H11_2460at 724.855 kb on + strand, within Ac3H11_2460at 724.855 kb on + strand, within Ac3H11_2460at 724.855 kb on + strand, within Ac3H11_2460at 724.855 kb on + strand, within Ac3H11_2460at 724.855 kb on + strand, within Ac3H11_2460at 724.855 kb on + strand, within Ac3H11_2460at 724.855 kb on + strand, within Ac3H11_2460at 724.855 kb on + strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 724.856 kb on - strand, within Ac3H11_2460at 725.212 kb on + strand, within Ac3H11_2460at 725.212 kb on + strand, within Ac3H11_2460at 725.212 kb on + strand, within Ac3H11_2460at 725.213 kb on - strand, within Ac3H11_2460at 725.213 kb on - strand, within Ac3H11_2460at 725.249 kb on + strand, within Ac3H11_2460at 725.324 kb on + strand, within Ac3H11_2460at 725.908 kb on + strand, within Ac3H11_2460at 725.909 kb on - strand, within Ac3H11_2460at 725.909 kb on - strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.920 kb on + strand, within Ac3H11_2460at 725.921 kb on - strand, within Ac3H11_2460at 725.921 kb on - strand, within Ac3H11_2460at 725.921 kb on - strand, within Ac3H11_2460at 725.921 kb on - strand, within Ac3H11_2460at 726.073 kb on + strandat 726.073 kb on + strandat 726.073 kb on + strandat 726.073 kb on + strandat 726.074 kb on - strandat 726.074 kb on - strandat 726.074 kb on - strandat 726.504 kb on - strandat 726.506 kb on + strandat 726.506 kb on + strandat 726.506 kb on + strandat 726.506 kb on + strandat 726.507 kb on - strandat 726.507 kb on - strandat 726.622 kb on + strandat 726.623 kb on - strandat 726.623 kb on - strandat 726.623 kb on - strandat 726.623 kb on - strandat 726.770 kb on - strand, within Ac3H11_2462at 726.828 kb on + strand, within Ac3H11_2462at 726.828 kb on + strand, within Ac3H11_2462at 726.828 kb on + strand, within Ac3H11_2462at 726.829 kb on - strand, within Ac3H11_2462at 726.946 kb on + strand, within Ac3H11_2462at 726.946 kb on + strand, within Ac3H11_2462at 726.946 kb on + strand, within Ac3H11_2462at 726.946 kb on + strand, within Ac3H11_2462at 726.947 kb on - strand, within Ac3H11_2462at 726.947 kb on - strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.994 kb on + strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 726.995 kb on - strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.174 kb on + strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462at 727.175 kb on - strand, within Ac3H11_2462

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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723,248 + -1.4
723,248 + +0.6
723,248 + -1.9
723,248 + +0.5
723,248 + -2.4
723,248 + -0.5
723,248 + +1.0
723,248 + -3.3
723,248 + -2.7
723,249 - +0.4
723,249 - -1.5
723,316 + +1.8
723,316 + +0.9
723,316 + -2.8
723,316 + +1.0
723,316 + -1.2
723,316 + -1.9
723,316 + -0.7
723,316 + -0.2
723,317 - +0.1
723,317 - -1.2
723,317 - +1.1
723,317 - -1.4
723,317 - +0.5
723,317 - +0.8
723,317 - +0.9
723,317 - +0.4
723,317 - +0.8
723,317 - -2.3
723,317 - -2.7
723,317 - +0.4
723,317 - +0.9
723,317 - -1.2
724,178 + +0.9
724,179 - -2.2
724,179 - +1.0
724,229 + +2.2
724,229 + -1.4
724,230 - -0.3
724,230 - -0.2
724,429 + Ac3H11_2460 0.11 +1.7
724,429 + Ac3H11_2460 0.11 +2.6
724,429 + Ac3H11_2460 0.11 -0.7
724,429 + Ac3H11_2460 0.11 -0.2
724,429 + Ac3H11_2460 0.11 -1.4
724,429 + Ac3H11_2460 0.11 -1.1
724,429 + Ac3H11_2460 0.11 -2.3
724,429 + Ac3H11_2460 0.11 -1.4
724,429 + Ac3H11_2460 0.11 -0.9
724,430 - Ac3H11_2460 0.11 -0.2
724,430 - Ac3H11_2460 0.11 -2.9
724,430 - Ac3H11_2460 0.11 +0.5
724,430 - Ac3H11_2460 0.11 +0.9
724,430 - Ac3H11_2460 0.11 +1.3
724,430 - Ac3H11_2460 0.11 -1.3
724,430 - Ac3H11_2460 0.11 -1.6
724,430 - Ac3H11_2460 0.11 +0.7
724,855 + Ac3H11_2460 0.32 -1.6
724,855 + Ac3H11_2460 0.32 -0.4
724,855 + Ac3H11_2460 0.32 +0.8
724,855 + Ac3H11_2460 0.32 +0.7
724,855 + Ac3H11_2460 0.32 -1.6
724,855 + Ac3H11_2460 0.32 -3.2
724,855 + Ac3H11_2460 0.32 +1.1
724,855 + Ac3H11_2460 0.32 +1.0
724,855 + Ac3H11_2460 0.32 -0.6
724,856 - Ac3H11_2460 0.32 +1.0
724,856 - Ac3H11_2460 0.32 -1.3
724,856 - Ac3H11_2460 0.32 -0.6
724,856 - Ac3H11_2460 0.32 +1.3
724,856 - Ac3H11_2460 0.32 +0.3
724,856 - Ac3H11_2460 0.32 -2.4
724,856 - Ac3H11_2460 0.32 +0.8
724,856 - Ac3H11_2460 0.32 +0.9
724,856 - Ac3H11_2460 0.32 +0.4
724,856 - Ac3H11_2460 0.32 -1.0
724,856 - Ac3H11_2460 0.32 +0.8
724,856 - Ac3H11_2460 0.32 -1.2
725,212 + Ac3H11_2460 0.49 -1.8
725,212 + Ac3H11_2460 0.49 -1.6
725,212 + Ac3H11_2460 0.49 -0.9
725,213 - Ac3H11_2460 0.49 +0.6
725,213 - Ac3H11_2460 0.49 -0.2
725,249 + Ac3H11_2460 0.51 -2.1
725,324 + Ac3H11_2460 0.55 -0.3
725,908 + Ac3H11_2460 0.83 -0.5
725,909 - Ac3H11_2460 0.83 -0.3
725,909 - Ac3H11_2460 0.83 -0.5
725,920 + Ac3H11_2460 0.84 -0.2
725,920 + Ac3H11_2460 0.84 -2.5
725,920 + Ac3H11_2460 0.84 +2.1
725,920 + Ac3H11_2460 0.84 +0.6
725,920 + Ac3H11_2460 0.84 +1.2
725,920 + Ac3H11_2460 0.84 +2.1
725,920 + Ac3H11_2460 0.84 +0.7
725,921 - Ac3H11_2460 0.84 -0.7
725,921 - Ac3H11_2460 0.84 +1.2
725,921 - Ac3H11_2460 0.84 +1.5
725,921 - Ac3H11_2460 0.84 +1.3
726,073 + -1.3
726,073 + -1.0
726,073 + +0.1
726,073 + +2.2
726,074 - +0.4
726,074 - -2.0
726,074 - -2.6
726,504 - -2.8
726,506 + -2.1
726,506 + +0.4
726,506 + +1.8
726,506 + +2.4
726,507 - -0.5
726,507 - -0.5
726,622 + -1.3
726,623 - -0.3
726,623 - +0.1
726,623 - +0.3
726,623 - -1.2
726,770 - Ac3H11_2462 0.25 +1.8
726,828 + Ac3H11_2462 0.33 -1.2
726,828 + Ac3H11_2462 0.33 -1.7
726,828 + Ac3H11_2462 0.33 -2.2
726,829 - Ac3H11_2462 0.33 +0.2
726,946 + Ac3H11_2462 0.47 -3.2
726,946 + Ac3H11_2462 0.47 +2.0
726,946 + Ac3H11_2462 0.47 +0.8
726,946 + Ac3H11_2462 0.47 -1.2
726,947 - Ac3H11_2462 0.47 +0.2
726,947 - Ac3H11_2462 0.47 -3.4
726,994 + Ac3H11_2462 0.53 +0.5
726,994 + Ac3H11_2462 0.53 +1.1
726,994 + Ac3H11_2462 0.53 +1.2
726,994 + Ac3H11_2462 0.53 +0.3
726,994 + Ac3H11_2462 0.53 -3.2
726,994 + Ac3H11_2462 0.53 +1.0
726,994 + Ac3H11_2462 0.53 +1.7
726,994 + Ac3H11_2462 0.53 +1.4
726,994 + Ac3H11_2462 0.53 +0.0
726,994 + Ac3H11_2462 0.53 +2.1
726,994 + Ac3H11_2462 0.53 -2.3
726,995 - Ac3H11_2462 0.53 +0.5
726,995 - Ac3H11_2462 0.53 +5.9
726,995 - Ac3H11_2462 0.53 +0.5
726,995 - Ac3H11_2462 0.53 -1.0
726,995 - Ac3H11_2462 0.53 +1.4
726,995 - Ac3H11_2462 0.53 -3.7
726,995 - Ac3H11_2462 0.53 -2.7
726,995 - Ac3H11_2462 0.53 +0.1
726,995 - Ac3H11_2462 0.53 +0.5
726,995 - Ac3H11_2462 0.53 +0.7
726,995 - Ac3H11_2462 0.53 +1.5
727,174 + Ac3H11_2462 0.75 -1.2
727,174 + Ac3H11_2462 0.75 +0.8
727,174 + Ac3H11_2462 0.75 -0.2
727,174 + Ac3H11_2462 0.75 +3.2
727,174 + Ac3H11_2462 0.75 +1.4
727,174 + Ac3H11_2462 0.75 -0.7
727,175 - Ac3H11_2462 0.76 -2.6
727,175 - Ac3H11_2462 0.76 -3.0
727,175 - Ac3H11_2462 0.76 +0.3
727,175 - Ac3H11_2462 0.76 +0.7
727,175 - Ac3H11_2462 0.76 +1.8

Or see this region's nucleotide sequence