Experiment: Paraquat dichloride 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2184 and Ac3H11_2185 are separated by 38 nucleotides Ac3H11_2185 and Ac3H11_2186 are separated by 53 nucleotides Ac3H11_2186 and Ac3H11_2187 are separated by 13 nucleotides Ac3H11_2187 and Ac3H11_2188 are separated by 25 nucleotides
Ac3H11_2184 - FIG00348557: hypothetical protein, at 413,901 to 416,738
_2184
Ac3H11_2185 - hypothetical secreted protein, at 416,777 to 417,499
_2185
Ac3H11_2186 - Sensor protein basS/pmrB (EC 2.7.3.-), at 417,553 to 418,854
_2186
Ac3H11_2187 - DNA-binding response regulator, at 418,868 to 419,527
_2187
Ac3H11_2188 - Ni,Fe-hydrogenase I cytochrome b subunit, at 419,553 to 420,098
_2188
Position (kb) 417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 416.738 kb on + strand at 416.738 kb on + strand at 416.738 kb on + strand at 416.738 kb on + strand at 416.739 kb on - strand at 416.766 kb on + strand at 416.766 kb on + strand at 416.766 kb on + strand at 416.767 kb on - strand at 416.767 kb on - strand at 416.767 kb on - strand at 416.767 kb on - strand at 417.181 kb on + strand, within Ac3H11_2185 at 417.182 kb on - strand, within Ac3H11_2185 at 417.263 kb on + strand, within Ac3H11_2185 at 417.263 kb on + strand, within Ac3H11_2185 at 417.264 kb on - strand, within Ac3H11_2185 at 417.525 kb on - strand at 417.686 kb on + strand, within Ac3H11_2186 at 417.686 kb on + strand, within Ac3H11_2186 at 417.687 kb on - strand, within Ac3H11_2186 at 417.687 kb on - strand, within Ac3H11_2186 at 417.687 kb on - strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.385 kb on + strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.386 kb on - strand, within Ac3H11_2186 at 418.653 kb on - strand, within Ac3H11_2186 at 418.691 kb on - strand, within Ac3H11_2186 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.981 kb on + strand, within Ac3H11_2187 at 418.982 kb on - strand, within Ac3H11_2187 at 418.982 kb on - strand, within Ac3H11_2187 at 419.403 kb on + strand, within Ac3H11_2187 at 419.403 kb on + strand, within Ac3H11_2187 at 419.403 kb on + strand, within Ac3H11_2187
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml remove 416,738 + -3.3 416,738 + -3.6 416,738 + -2.6 416,738 + -0.9 416,739 - +1.1 416,766 + +0.6 416,766 + -0.0 416,766 + -0.6 416,767 - +0.6 416,767 - -2.9 416,767 - +0.6 416,767 - -1.4 417,181 + Ac3H11_2185 0.56 -2.3 417,182 - Ac3H11_2185 0.56 +1.1 417,263 + Ac3H11_2185 0.67 +1.8 417,263 + Ac3H11_2185 0.67 +0.6 417,264 - Ac3H11_2185 0.67 +1.9 417,525 - +1.5 417,686 + Ac3H11_2186 0.10 -0.4 417,686 + Ac3H11_2186 0.10 +0.1 417,687 - Ac3H11_2186 0.10 +1.5 417,687 - Ac3H11_2186 0.10 +1.8 417,687 - Ac3H11_2186 0.10 +2.1 418,385 + Ac3H11_2186 0.64 +0.1 418,385 + Ac3H11_2186 0.64 +1.4 418,385 + Ac3H11_2186 0.64 +0.7 418,385 + Ac3H11_2186 0.64 -1.2 418,385 + Ac3H11_2186 0.64 -0.2 418,386 - Ac3H11_2186 0.64 +1.8 418,386 - Ac3H11_2186 0.64 +0.8 418,386 - Ac3H11_2186 0.64 +2.0 418,386 - Ac3H11_2186 0.64 +1.5 418,386 - Ac3H11_2186 0.64 +1.9 418,386 - Ac3H11_2186 0.64 +1.2 418,653 - Ac3H11_2186 0.84 +1.8 418,691 - Ac3H11_2186 0.87 +1.3 418,981 + Ac3H11_2187 0.17 -0.0 418,981 + Ac3H11_2187 0.17 -0.8 418,981 + Ac3H11_2187 0.17 -0.1 418,981 + Ac3H11_2187 0.17 -0.5 418,981 + Ac3H11_2187 0.17 -3.5 418,982 - Ac3H11_2187 0.17 +1.2 418,982 - Ac3H11_2187 0.17 +1.1 419,403 + Ac3H11_2187 0.81 -0.0 419,403 + Ac3H11_2187 0.81 +3.1 419,403 + Ac3H11_2187 0.81 -0.4
Or see this region's nucleotide sequence