Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2049

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2048 and Ac3H11_2049 are separated by 89 nucleotidesAc3H11_2049 and Ac3H11_2050 are separated by 118 nucleotides Ac3H11_2048 - Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A, at 269,018 to 270,235 _2048 Ac3H11_2049 - Putative gluthatione transporter,solute-binding component, at 270,325 to 271,905 _2049 Ac3H11_2050 - Dipeptide transport system permease protein DppC (TC 3.A.1.5.2), at 272,024 to 272,935 _2050 Position (kb) 270 271 272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 269.399 kb on + strand, within Ac3H11_2048at 269.399 kb on + strand, within Ac3H11_2048at 269.400 kb on - strand, within Ac3H11_2048at 269.400 kb on - strand, within Ac3H11_2048at 269.400 kb on - strand, within Ac3H11_2048at 269.528 kb on + strand, within Ac3H11_2048at 269.528 kb on + strand, within Ac3H11_2048at 269.528 kb on + strand, within Ac3H11_2048at 269.528 kb on + strand, within Ac3H11_2048at 269.528 kb on + strand, within Ac3H11_2048at 269.528 kb on + strand, within Ac3H11_2048at 269.528 kb on + strand, within Ac3H11_2048at 269.528 kb on + strand, within Ac3H11_2048at 269.529 kb on - strand, within Ac3H11_2048at 269.529 kb on - strand, within Ac3H11_2048at 269.529 kb on - strand, within Ac3H11_2048at 269.529 kb on - strand, within Ac3H11_2048at 269.529 kb on - strand, within Ac3H11_2048at 269.529 kb on - strand, within Ac3H11_2048at 269.529 kb on - strand, within Ac3H11_2048at 269.529 kb on - strand, within Ac3H11_2048at 269.529 kb on - strand, within Ac3H11_2048at 269.930 kb on + strand, within Ac3H11_2048at 269.930 kb on + strand, within Ac3H11_2048at 269.931 kb on - strand, within Ac3H11_2048at 269.931 kb on - strand, within Ac3H11_2048at 269.931 kb on - strand, within Ac3H11_2048at 269.942 kb on + strand, within Ac3H11_2048at 269.942 kb on + strand, within Ac3H11_2048at 269.942 kb on + strand, within Ac3H11_2048at 269.943 kb on - strand, within Ac3H11_2048at 269.943 kb on - strand, within Ac3H11_2048at 270.040 kb on + strand, within Ac3H11_2048at 270.040 kb on + strand, within Ac3H11_2048at 270.040 kb on + strand, within Ac3H11_2048at 270.040 kb on + strand, within Ac3H11_2048at 270.040 kb on + strand, within Ac3H11_2048at 270.041 kb on - strand, within Ac3H11_2048at 270.041 kb on - strand, within Ac3H11_2048at 270.041 kb on - strand, within Ac3H11_2048at 270.041 kb on - strand, within Ac3H11_2048at 270.092 kb on + strand, within Ac3H11_2048at 270.092 kb on + strand, within Ac3H11_2048at 270.093 kb on - strand, within Ac3H11_2048at 270.298 kb on + strandat 270.493 kb on + strand, within Ac3H11_2049at 270.493 kb on + strand, within Ac3H11_2049at 270.493 kb on + strand, within Ac3H11_2049at 270.493 kb on + strand, within Ac3H11_2049at 270.493 kb on + strand, within Ac3H11_2049at 270.494 kb on - strand, within Ac3H11_2049at 270.494 kb on - strand, within Ac3H11_2049at 270.494 kb on - strand, within Ac3H11_2049at 270.494 kb on - strand, within Ac3H11_2049at 270.494 kb on - strand, within Ac3H11_2049at 270.494 kb on - strand, within Ac3H11_2049at 270.691 kb on + strand, within Ac3H11_2049at 270.691 kb on + strand, within Ac3H11_2049at 270.691 kb on + strand, within Ac3H11_2049at 270.692 kb on - strand, within Ac3H11_2049at 270.692 kb on - strand, within Ac3H11_2049at 270.692 kb on - strand, within Ac3H11_2049at 270.692 kb on - strand, within Ac3H11_2049at 270.793 kb on + strand, within Ac3H11_2049at 270.793 kb on + strand, within Ac3H11_2049at 270.793 kb on + strand, within Ac3H11_2049at 270.794 kb on - strand, within Ac3H11_2049at 270.794 kb on - strand, within Ac3H11_2049at 270.794 kb on - strand, within Ac3H11_2049at 270.794 kb on - strand, within Ac3H11_2049at 270.794 kb on - strand, within Ac3H11_2049at 270.958 kb on + strand, within Ac3H11_2049at 270.959 kb on - strand, within Ac3H11_2049at 270.959 kb on - strand, within Ac3H11_2049at 270.959 kb on - strand, within Ac3H11_2049at 270.959 kb on - strand, within Ac3H11_2049at 271.183 kb on + strand, within Ac3H11_2049at 271.184 kb on - strand, within Ac3H11_2049at 271.240 kb on + strand, within Ac3H11_2049at 271.240 kb on + strand, within Ac3H11_2049at 271.240 kb on + strand, within Ac3H11_2049at 271.240 kb on + strand, within Ac3H11_2049at 271.241 kb on - strand, within Ac3H11_2049at 271.360 kb on + strand, within Ac3H11_2049at 271.361 kb on - strand, within Ac3H11_2049at 271.447 kb on + strand, within Ac3H11_2049at 271.448 kb on - strand, within Ac3H11_2049at 271.448 kb on - strand, within Ac3H11_2049at 271.448 kb on - strand, within Ac3H11_2049at 271.448 kb on - strand, within Ac3H11_2049at 271.448 kb on - strand, within Ac3H11_2049at 271.540 kb on + strand, within Ac3H11_2049at 271.540 kb on + strand, within Ac3H11_2049at 271.540 kb on + strand, within Ac3H11_2049at 271.540 kb on + strand, within Ac3H11_2049at 271.540 kb on + strand, within Ac3H11_2049at 271.540 kb on + strand, within Ac3H11_2049at 271.540 kb on + strand, within Ac3H11_2049at 271.540 kb on + strand, within Ac3H11_2049at 271.541 kb on - strand, within Ac3H11_2049at 271.541 kb on - strand, within Ac3H11_2049at 271.541 kb on - strand, within Ac3H11_2049at 271.541 kb on - strand, within Ac3H11_2049at 271.541 kb on - strand, within Ac3H11_2049at 271.541 kb on - strand, within Ac3H11_2049at 271.576 kb on + strand, within Ac3H11_2049at 271.576 kb on + strand, within Ac3H11_2049at 271.576 kb on + strand, within Ac3H11_2049at 271.576 kb on + strand, within Ac3H11_2049at 271.576 kb on + strand, within Ac3H11_2049at 271.576 kb on + strand, within Ac3H11_2049at 271.576 kb on + strand, within Ac3H11_2049at 271.576 kb on + strand, within Ac3H11_2049at 271.577 kb on - strand, within Ac3H11_2049at 271.577 kb on - strand, within Ac3H11_2049at 271.577 kb on - strand, within Ac3H11_2049at 271.577 kb on - strand, within Ac3H11_2049at 271.603 kb on + strand, within Ac3H11_2049at 271.603 kb on + strand, within Ac3H11_2049at 271.603 kb on + strand, within Ac3H11_2049at 271.603 kb on + strand, within Ac3H11_2049at 271.603 kb on + strand, within Ac3H11_2049at 271.604 kb on - strand, within Ac3H11_2049at 271.604 kb on - strand, within Ac3H11_2049at 271.604 kb on - strand, within Ac3H11_2049at 271.604 kb on - strand, within Ac3H11_2049at 271.604 kb on - strand, within Ac3H11_2049at 271.604 kb on - strand, within Ac3H11_2049at 271.604 kb on - strand, within Ac3H11_2049at 271.604 kb on - strand, within Ac3H11_2049at 271.604 kb on - strand, within Ac3H11_2049at 271.681 kb on + strand, within Ac3H11_2049at 271.682 kb on - strand, within Ac3H11_2049at 271.682 kb on - strand, within Ac3H11_2049at 271.903 kb on + strandat 271.903 kb on + strandat 271.903 kb on + strandat 271.903 kb on + strandat 271.903 kb on + strandat 271.904 kb on - strandat 271.904 kb on - strandat 271.904 kb on - strandat 271.904 kb on - strandat 272.010 kb on + strandat 272.240 kb on + strand, within Ac3H11_2050at 272.240 kb on + strand, within Ac3H11_2050at 272.240 kb on + strand, within Ac3H11_2050at 272.240 kb on + strand, within Ac3H11_2050at 272.241 kb on - strand, within Ac3H11_2050at 272.291 kb on + strand, within Ac3H11_2050at 272.291 kb on + strand, within Ac3H11_2050at 272.292 kb on - strand, within Ac3H11_2050at 272.292 kb on - strand, within Ac3H11_2050at 272.292 kb on - strand, within Ac3H11_2050at 272.292 kb on - strand, within Ac3H11_2050at 272.559 kb on - strand, within Ac3H11_2050at 272.607 kb on - strand, within Ac3H11_2050at 272.607 kb on - strand, within Ac3H11_2050at 272.607 kb on - strand, within Ac3H11_2050at 272.664 kb on + strand, within Ac3H11_2050at 272.664 kb on + strand, within Ac3H11_2050at 272.664 kb on + strand, within Ac3H11_2050at 272.664 kb on + strand, within Ac3H11_2050at 272.665 kb on - strand, within Ac3H11_2050at 272.665 kb on - strand, within Ac3H11_2050at 272.665 kb on - strand, within Ac3H11_2050at 272.665 kb on - strand, within Ac3H11_2050at 272.665 kb on - strand, within Ac3H11_2050at 272.814 kb on - strand, within Ac3H11_2050at 272.814 kb on - strand, within Ac3H11_2050at 272.814 kb on - strand, within Ac3H11_2050

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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269,399 + Ac3H11_2048 0.31 +3.0
269,399 + Ac3H11_2048 0.31 -0.7
269,400 - Ac3H11_2048 0.31 +1.2
269,400 - Ac3H11_2048 0.31 -0.8
269,400 - Ac3H11_2048 0.31 +1.7
269,528 + Ac3H11_2048 0.42 -1.4
269,528 + Ac3H11_2048 0.42 -0.3
269,528 + Ac3H11_2048 0.42 -0.8
269,528 + Ac3H11_2048 0.42 -1.9
269,528 + Ac3H11_2048 0.42 +0.2
269,528 + Ac3H11_2048 0.42 +1.1
269,528 + Ac3H11_2048 0.42 +0.1
269,528 + Ac3H11_2048 0.42 -3.1
269,529 - Ac3H11_2048 0.42 +0.9
269,529 - Ac3H11_2048 0.42 +0.4
269,529 - Ac3H11_2048 0.42 -1.5
269,529 - Ac3H11_2048 0.42 -0.1
269,529 - Ac3H11_2048 0.42 +3.8
269,529 - Ac3H11_2048 0.42 +1.1
269,529 - Ac3H11_2048 0.42 +1.0
269,529 - Ac3H11_2048 0.42 -1.1
269,529 - Ac3H11_2048 0.42 -3.7
269,930 + Ac3H11_2048 0.75 +0.5
269,930 + Ac3H11_2048 0.75 +1.4
269,931 - Ac3H11_2048 0.75 +1.1
269,931 - Ac3H11_2048 0.75 -0.9
269,931 - Ac3H11_2048 0.75 -0.0
269,942 + Ac3H11_2048 0.76 -2.1
269,942 + Ac3H11_2048 0.76 +0.1
269,942 + Ac3H11_2048 0.76 +2.1
269,943 - Ac3H11_2048 0.76 +0.8
269,943 - Ac3H11_2048 0.76 +0.7
270,040 + Ac3H11_2048 0.84 -0.9
270,040 + Ac3H11_2048 0.84 +0.5
270,040 + Ac3H11_2048 0.84 -2.0
270,040 + Ac3H11_2048 0.84 -0.4
270,040 + Ac3H11_2048 0.84 -3.5
270,041 - Ac3H11_2048 0.84 +0.8
270,041 - Ac3H11_2048 0.84 -0.5
270,041 - Ac3H11_2048 0.84 -1.7
270,041 - Ac3H11_2048 0.84 -0.7
270,092 + Ac3H11_2048 0.88 +0.3
270,092 + Ac3H11_2048 0.88 +1.0
270,093 - Ac3H11_2048 0.88 +1.6
270,298 + -0.4
270,493 + Ac3H11_2049 0.11 -1.9
270,493 + Ac3H11_2049 0.11 -1.0
270,493 + Ac3H11_2049 0.11 +1.0
270,493 + Ac3H11_2049 0.11 +1.7
270,493 + Ac3H11_2049 0.11 +1.7
270,494 - Ac3H11_2049 0.11 +2.2
270,494 - Ac3H11_2049 0.11 -0.3
270,494 - Ac3H11_2049 0.11 +0.3
270,494 - Ac3H11_2049 0.11 +0.3
270,494 - Ac3H11_2049 0.11 +1.3
270,494 - Ac3H11_2049 0.11 -2.5
270,691 + Ac3H11_2049 0.23 +0.2
270,691 + Ac3H11_2049 0.23 -2.0
270,691 + Ac3H11_2049 0.23 +0.5
270,692 - Ac3H11_2049 0.23 +1.4
270,692 - Ac3H11_2049 0.23 +3.3
270,692 - Ac3H11_2049 0.23 +0.9
270,692 - Ac3H11_2049 0.23 +0.9
270,793 + Ac3H11_2049 0.30 +2.2
270,793 + Ac3H11_2049 0.30 +1.4
270,793 + Ac3H11_2049 0.30 -1.2
270,794 - Ac3H11_2049 0.30 -0.7
270,794 - Ac3H11_2049 0.30 +1.4
270,794 - Ac3H11_2049 0.30 -0.1
270,794 - Ac3H11_2049 0.30 -0.1
270,794 - Ac3H11_2049 0.30 +1.8
270,958 + Ac3H11_2049 0.40 +1.6
270,959 - Ac3H11_2049 0.40 -0.1
270,959 - Ac3H11_2049 0.40 -0.6
270,959 - Ac3H11_2049 0.40 +0.9
270,959 - Ac3H11_2049 0.40 +0.9
271,183 + Ac3H11_2049 0.54 +1.0
271,184 - Ac3H11_2049 0.54 +2.0
271,240 + Ac3H11_2049 0.58 +1.6
271,240 + Ac3H11_2049 0.58 +0.1
271,240 + Ac3H11_2049 0.58 +1.2
271,240 + Ac3H11_2049 0.58 +0.9
271,241 - Ac3H11_2049 0.58 +1.2
271,360 + Ac3H11_2049 0.65 -0.0
271,361 - Ac3H11_2049 0.66 +1.9
271,447 + Ac3H11_2049 0.71 -1.6
271,448 - Ac3H11_2049 0.71 +1.3
271,448 - Ac3H11_2049 0.71 -0.6
271,448 - Ac3H11_2049 0.71 -0.2
271,448 - Ac3H11_2049 0.71 -3.2
271,448 - Ac3H11_2049 0.71 -0.4
271,540 + Ac3H11_2049 0.77 +0.9
271,540 + Ac3H11_2049 0.77 -2.3
271,540 + Ac3H11_2049 0.77 -0.1
271,540 + Ac3H11_2049 0.77 -3.4
271,540 + Ac3H11_2049 0.77 +0.7
271,540 + Ac3H11_2049 0.77 -0.4
271,540 + Ac3H11_2049 0.77 -4.3
271,540 + Ac3H11_2049 0.77 -1.1
271,541 - Ac3H11_2049 0.77 +1.6
271,541 - Ac3H11_2049 0.77 -1.5
271,541 - Ac3H11_2049 0.77 +2.4
271,541 - Ac3H11_2049 0.77 +1.3
271,541 - Ac3H11_2049 0.77 +0.6
271,541 - Ac3H11_2049 0.77 +0.9
271,576 + Ac3H11_2049 0.79 -1.1
271,576 + Ac3H11_2049 0.79 -0.4
271,576 + Ac3H11_2049 0.79 -2.6
271,576 + Ac3H11_2049 0.79 +0.8
271,576 + Ac3H11_2049 0.79 +0.9
271,576 + Ac3H11_2049 0.79 +1.4
271,576 + Ac3H11_2049 0.79 +0.4
271,576 + Ac3H11_2049 0.79 +2.0
271,577 - Ac3H11_2049 0.79 -0.5
271,577 - Ac3H11_2049 0.79 +1.8
271,577 - Ac3H11_2049 0.79 -1.6
271,577 - Ac3H11_2049 0.79 -3.1
271,603 + Ac3H11_2049 0.81 +1.3
271,603 + Ac3H11_2049 0.81 +2.1
271,603 + Ac3H11_2049 0.81 -0.5
271,603 + Ac3H11_2049 0.81 -2.4
271,603 + Ac3H11_2049 0.81 -0.4
271,604 - Ac3H11_2049 0.81 +1.2
271,604 - Ac3H11_2049 0.81 +2.1
271,604 - Ac3H11_2049 0.81 +0.8
271,604 - Ac3H11_2049 0.81 +0.1
271,604 - Ac3H11_2049 0.81 +0.6
271,604 - Ac3H11_2049 0.81 -2.3
271,604 - Ac3H11_2049 0.81 +0.6
271,604 - Ac3H11_2049 0.81 -0.9
271,604 - Ac3H11_2049 0.81 +2.3
271,681 + Ac3H11_2049 0.86 -0.9
271,682 - Ac3H11_2049 0.86 +3.1
271,682 - Ac3H11_2049 0.86 +2.5
271,903 + -3.1
271,903 + -2.4
271,903 + -0.5
271,903 + +1.5
271,903 + +1.5
271,904 - +1.8
271,904 - +1.3
271,904 - +1.8
271,904 - +0.6
272,010 + -1.9
272,240 + Ac3H11_2050 0.24 -0.3
272,240 + Ac3H11_2050 0.24 +1.2
272,240 + Ac3H11_2050 0.24 +1.6
272,240 + Ac3H11_2050 0.24 -2.0
272,241 - Ac3H11_2050 0.24 +1.6
272,291 + Ac3H11_2050 0.29 +1.1
272,291 + Ac3H11_2050 0.29 +1.2
272,292 - Ac3H11_2050 0.29 -1.7
272,292 - Ac3H11_2050 0.29 -2.3
272,292 - Ac3H11_2050 0.29 +0.5
272,292 - Ac3H11_2050 0.29 +0.4
272,559 - Ac3H11_2050 0.59 +0.7
272,607 - Ac3H11_2050 0.64 -1.9
272,607 - Ac3H11_2050 0.64 -0.6
272,607 - Ac3H11_2050 0.64 +1.7
272,664 + Ac3H11_2050 0.70 +1.6
272,664 + Ac3H11_2050 0.70 -1.2
272,664 + Ac3H11_2050 0.70 +0.7
272,664 + Ac3H11_2050 0.70 -3.2
272,665 - Ac3H11_2050 0.70 +0.5
272,665 - Ac3H11_2050 0.70 +0.5
272,665 - Ac3H11_2050 0.70 +0.6
272,665 - Ac3H11_2050 0.70 +1.6
272,665 - Ac3H11_2050 0.70 +2.3
272,814 - Ac3H11_2050 0.87 -0.0
272,814 - Ac3H11_2050 0.87 +1.6
272,814 - Ac3H11_2050 0.87 -0.1

Or see this region's nucleotide sequence