Experiment: Paraquat dichloride 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1940 and Ac3H11_1941 are separated by 108 nucleotides Ac3H11_1941 and Ac3H11_1942 are separated by 181 nucleotides Ac3H11_1942 and Ac3H11_1943 overlap by 4 nucleotides
Ac3H11_1940 - Enoyl-CoA hydratase (EC 4.2.1.17), at 156,022 to 156,819
_1940
Ac3H11_1941 - putative protein PaaI, possibly involved in aromatic compounds catabolism, at 156,928 to 157,413
_1941
Ac3H11_1942 - Phenylacetic acid degradation protein paaI, at 157,595 to 158,053
_1942
Ac3H11_1943 - Cu(I)-responsive transcriptional regulator, at 158,050 to 158,505
_1943
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 155.978 kb on - strand at 155.984 kb on + strand at 155.984 kb on + strand at 155.984 kb on + strand at 155.985 kb on - strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.997 kb on + strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.998 kb on - strand at 155.999 kb on + strand at 155.999 kb on + strand at 156.000 kb on - strand at 156.029 kb on + strand at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.430 kb on + strand, within Ac3H11_1940 at 156.431 kb on - strand, within Ac3H11_1940 at 156.858 kb on + strand at 156.863 kb on - strand at 157.105 kb on + strand, within Ac3H11_1941 at 157.105 kb on + strand, within Ac3H11_1941 at 157.112 kb on - strand, within Ac3H11_1941 at 157.267 kb on + strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.268 kb on - strand, within Ac3H11_1941 at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.399 kb on + strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.400 kb on - strand at 157.418 kb on + strand at 157.419 kb on - strand at 157.487 kb on + strand at 157.487 kb on + strand at 157.488 kb on - strand at 157.496 kb on + strand at 157.496 kb on + strand at 157.496 kb on + strand at 157.497 kb on - strand at 157.497 kb on - strand at 157.497 kb on - strand at 157.497 kb on - strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.500 kb on + strand at 157.501 kb on - strand at 157.501 kb on - strand at 157.506 kb on + strand at 157.507 kb on - strand at 157.860 kb on + strand, within Ac3H11_1942 at 157.861 kb on - strand, within Ac3H11_1942 at 157.861 kb on - strand, within Ac3H11_1942 at 157.946 kb on - strand, within Ac3H11_1942 at 158.330 kb on - strand, within Ac3H11_1943
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml remove 155,978 - +0.8 155,984 + +0.4 155,984 + +1.7 155,984 + -0.7 155,985 - +0.2 155,997 + -2.7 155,997 + -1.2 155,997 + -2.0 155,997 + -0.2 155,997 + -2.3 155,997 + -2.8 155,997 + -0.4 155,997 + -3.4 155,997 + +0.6 155,998 - +0.1 155,998 - -1.6 155,998 - +0.0 155,998 - -0.0 155,998 - +0.1 155,999 + -3.4 155,999 + +0.5 156,000 - -3.3 156,029 + -0.4 156,430 + Ac3H11_1940 0.51 -0.8 156,430 + Ac3H11_1940 0.51 +1.4 156,430 + Ac3H11_1940 0.51 -2.8 156,430 + Ac3H11_1940 0.51 +0.8 156,430 + Ac3H11_1940 0.51 +0.1 156,430 + Ac3H11_1940 0.51 +2.2 156,431 - Ac3H11_1940 0.51 +1.0 156,858 + +0.1 156,863 - -1.5 157,105 + Ac3H11_1941 0.36 +1.0 157,105 + Ac3H11_1941 0.36 -0.4 157,112 - Ac3H11_1941 0.38 -0.1 157,267 + Ac3H11_1941 0.70 -2.0 157,268 - Ac3H11_1941 0.70 +1.4 157,268 - Ac3H11_1941 0.70 +1.6 157,268 - Ac3H11_1941 0.70 +0.3 157,268 - Ac3H11_1941 0.70 -0.8 157,399 + +1.4 157,399 + +0.7 157,399 + +2.6 157,399 + -1.4 157,400 - +0.6 157,400 - +3.6 157,400 - -2.0 157,400 - -0.6 157,418 + +0.9 157,419 - +1.2 157,487 + +0.9 157,487 + -1.0 157,488 - -3.0 157,496 + -0.4 157,496 + -3.0 157,496 + -1.7 157,497 - +0.6 157,497 - -2.1 157,497 - +1.8 157,497 - +0.0 157,500 + +1.6 157,500 + -0.7 157,500 + +0.8 157,500 + -0.1 157,500 + -0.6 157,500 + -0.9 157,500 + +1.2 157,501 - -0.2 157,501 - -1.7 157,506 + -0.3 157,507 - +1.1 157,860 + Ac3H11_1942 0.58 -0.1 157,861 - Ac3H11_1942 0.58 +0.2 157,861 - Ac3H11_1942 0.58 +0.4 157,946 - Ac3H11_1942 0.76 +1.7 158,330 - Ac3H11_1943 0.61 -2.8
Or see this region's nucleotide sequence