Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_178

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_176 and Ac3H11_177 are separated by 9 nucleotidesAc3H11_177 and Ac3H11_178 are separated by 91 nucleotidesAc3H11_178 and Ac3H11_179 are separated by 184 nucleotides Ac3H11_176 - Transcriptional regulator, MarR family, at 64,835 to 65,380 _176 Ac3H11_177 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 65,390 to 66,163 _177 Ac3H11_178 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 66,255 to 67,439 _178 Ac3H11_179 - Tricarboxylate transport protein TctC, at 67,624 to 68,607 _179 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 65.368 kb on + strandat 65.369 kb on - strandat 65.378 kb on + strandat 65.379 kb on - strandat 65.398 kb on + strandat 65.398 kb on + strandat 65.398 kb on + strandat 65.399 kb on - strandat 65.399 kb on - strandat 65.399 kb on - strandat 65.399 kb on - strandat 65.408 kb on + strandat 65.408 kb on + strandat 65.408 kb on + strandat 65.408 kb on + strandat 65.408 kb on + strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.409 kb on - strandat 65.871 kb on - strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.952 kb on + strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 65.953 kb on - strand, within Ac3H11_177at 66.168 kb on - strandat 66.170 kb on + strandat 66.188 kb on + strandat 66.189 kb on - strandat 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.450 kb on + strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.451 kb on - strand, within Ac3H11_178at 66.837 kb on + strand, within Ac3H11_178at 66.838 kb on - strand, within Ac3H11_178at 66.894 kb on + strand, within Ac3H11_178at 66.894 kb on + strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 66.895 kb on - strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.119 kb on + strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.120 kb on - strand, within Ac3H11_178at 67.278 kb on - strand, within Ac3H11_178at 67.384 kb on + strandat 67.385 kb on - strandat 67.442 kb on + strandat 67.443 kb on - strandat 67.443 kb on - strandat 67.443 kb on - strandat 67.443 kb on - strandat 67.711 kb on + strandat 67.945 kb on + strand, within Ac3H11_179at 67.945 kb on + strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 67.946 kb on - strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.041 kb on + strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.042 kb on - strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.098 kb on + strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.099 kb on - strand, within Ac3H11_179at 68.185 kb on + strand, within Ac3H11_179at 68.185 kb on + strand, within Ac3H11_179at 68.186 kb on - strand, within Ac3H11_179at 68.390 kb on - strand, within Ac3H11_179

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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65,368 + -0.6
65,369 - -2.3
65,378 + -0.8
65,379 - -1.6
65,398 + -2.6
65,398 + +1.9
65,398 + +0.6
65,399 - +0.4
65,399 - -1.4
65,399 - -0.4
65,399 - +2.4
65,408 + +1.5
65,408 + -1.1
65,408 + +1.4
65,408 + -0.6
65,408 + -2.0
65,409 - -0.0
65,409 - -1.8
65,409 - -2.6
65,409 - +0.9
65,409 - +1.1
65,409 - +0.2
65,409 - -1.7
65,871 - Ac3H11_177 0.62 -2.3
65,952 + Ac3H11_177 0.73 +2.0
65,952 + Ac3H11_177 0.73 -1.1
65,952 + Ac3H11_177 0.73 -0.6
65,952 + Ac3H11_177 0.73 +1.5
65,952 + Ac3H11_177 0.73 -0.5
65,952 + Ac3H11_177 0.73 +0.4
65,953 - Ac3H11_177 0.73 -2.2
65,953 - Ac3H11_177 0.73 -0.2
65,953 - Ac3H11_177 0.73 -0.8
65,953 - Ac3H11_177 0.73 +1.1
65,953 - Ac3H11_177 0.73 -0.4
65,953 - Ac3H11_177 0.73 -0.8
66,168 - +0.4
66,170 + -1.6
66,188 + +0.7
66,189 - -0.8
66,450 + Ac3H11_178 0.16 -2.2
66,450 + Ac3H11_178 0.16 +0.9
66,450 + Ac3H11_178 0.16 +2.3
66,450 + Ac3H11_178 0.16 -0.1
66,450 + Ac3H11_178 0.16 -3.0
66,450 + Ac3H11_178 0.16 -2.8
66,450 + Ac3H11_178 0.16 -0.7
66,450 + Ac3H11_178 0.16 +1.4
66,450 + Ac3H11_178 0.16 +0.4
66,450 + Ac3H11_178 0.16 +0.6
66,450 + Ac3H11_178 0.16 -0.0
66,450 + Ac3H11_178 0.16 +0.7
66,451 - Ac3H11_178 0.17 +2.0
66,451 - Ac3H11_178 0.17 +2.2
66,451 - Ac3H11_178 0.17 -0.7
66,451 - Ac3H11_178 0.17 +0.4
66,451 - Ac3H11_178 0.17 +0.4
66,451 - Ac3H11_178 0.17 -1.3
66,451 - Ac3H11_178 0.17 -0.8
66,451 - Ac3H11_178 0.17 -3.3
66,451 - Ac3H11_178 0.17 +1.0
66,451 - Ac3H11_178 0.17 -2.1
66,451 - Ac3H11_178 0.17 +0.9
66,451 - Ac3H11_178 0.17 -3.1
66,451 - Ac3H11_178 0.17 +0.4
66,451 - Ac3H11_178 0.17 -0.6
66,451 - Ac3H11_178 0.17 +0.2
66,837 + Ac3H11_178 0.49 -2.3
66,838 - Ac3H11_178 0.49 -0.4
66,894 + Ac3H11_178 0.54 +1.0
66,894 + Ac3H11_178 0.54 +0.4
66,895 - Ac3H11_178 0.54 +1.6
66,895 - Ac3H11_178 0.54 +2.4
66,895 - Ac3H11_178 0.54 +4.5
66,895 - Ac3H11_178 0.54 -2.2
67,119 + Ac3H11_178 0.73 -0.1
67,119 + Ac3H11_178 0.73 +1.1
67,119 + Ac3H11_178 0.73 +0.8
67,119 + Ac3H11_178 0.73 +2.0
67,119 + Ac3H11_178 0.73 +0.5
67,119 + Ac3H11_178 0.73 -0.1
67,119 + Ac3H11_178 0.73 -1.0
67,120 - Ac3H11_178 0.73 -1.3
67,120 - Ac3H11_178 0.73 -3.6
67,120 - Ac3H11_178 0.73 -1.9
67,120 - Ac3H11_178 0.73 +0.3
67,278 - Ac3H11_178 0.86 -1.1
67,384 + -0.9
67,385 - -0.1
67,442 + -1.9
67,443 - -0.7
67,443 - -3.1
67,443 - +1.7
67,443 - +1.1
67,711 + +1.8
67,945 + Ac3H11_179 0.33 +2.1
67,945 + Ac3H11_179 0.33 +1.5
67,946 - Ac3H11_179 0.33 -0.1
67,946 - Ac3H11_179 0.33 -0.9
67,946 - Ac3H11_179 0.33 -2.3
67,946 - Ac3H11_179 0.33 -0.6
68,041 + Ac3H11_179 0.42 +0.1
68,041 + Ac3H11_179 0.42 +1.1
68,041 + Ac3H11_179 0.42 -1.4
68,042 - Ac3H11_179 0.42 -0.4
68,042 - Ac3H11_179 0.42 -0.1
68,042 - Ac3H11_179 0.42 -1.8
68,042 - Ac3H11_179 0.42 -2.0
68,098 + Ac3H11_179 0.48 -2.6
68,098 + Ac3H11_179 0.48 +1.3
68,098 + Ac3H11_179 0.48 +0.7
68,098 + Ac3H11_179 0.48 -0.4
68,098 + Ac3H11_179 0.48 -1.0
68,098 + Ac3H11_179 0.48 -0.4
68,098 + Ac3H11_179 0.48 -2.3
68,099 - Ac3H11_179 0.48 -0.4
68,099 - Ac3H11_179 0.48 -0.9
68,099 - Ac3H11_179 0.48 -0.5
68,099 - Ac3H11_179 0.48 -0.0
68,099 - Ac3H11_179 0.48 +1.3
68,099 - Ac3H11_179 0.48 -1.1
68,099 - Ac3H11_179 0.48 -0.9
68,099 - Ac3H11_179 0.48 -1.7
68,099 - Ac3H11_179 0.48 -1.4
68,099 - Ac3H11_179 0.48 -0.9
68,185 + Ac3H11_179 0.57 +1.2
68,185 + Ac3H11_179 0.57 -0.7
68,186 - Ac3H11_179 0.57 -2.0
68,390 - Ac3H11_179 0.78 -2.0

Or see this region's nucleotide sequence