Experiment: Paraquat dichloride 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1707 and Ac3H11_1708 are separated by 19 nucleotides Ac3H11_1708 and Ac3H11_1709 are separated by 196 nucleotides Ac3H11_1709 and Ac3H11_1710 are separated by 24 nucleotides Ac3H11_1710 and Ac3H11_1711 are separated by 46 nucleotides
Ac3H11_1707 - FIG00933533: hypothetical protein, at 308,438 to 310,291
_1707
Ac3H11_1708 - FIG00932121: hypothetical protein, at 310,311 to 310,616
_1708
Ac3H11_1709 - Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2), at 310,813 to 311,400
_1709
Ac3H11_1710 - Virulence factor mviM, at 311,425 to 312,129
_1710
Ac3H11_1711 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 312,176 to 313,357
_1711
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 310.147 kb on + strand at 310.147 kb on + strand at 310.148 kb on - strand at 310.185 kb on + strand at 310.185 kb on + strand at 310.185 kb on + strand at 310.186 kb on - strand at 310.186 kb on - strand at 310.186 kb on - strand at 310.221 kb on + strand at 310.335 kb on - strand at 310.335 kb on - strand at 310.335 kb on - strand at 310.335 kb on - strand at 310.335 kb on - strand at 310.410 kb on + strand, within Ac3H11_1708 at 310.411 kb on - strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.419 kb on + strand, within Ac3H11_1708 at 310.420 kb on - strand, within Ac3H11_1708 at 310.420 kb on - strand, within Ac3H11_1708 at 310.420 kb on - strand, within Ac3H11_1708 at 310.420 kb on - strand, within Ac3H11_1708 at 310.434 kb on + strand, within Ac3H11_1708 at 310.434 kb on + strand, within Ac3H11_1708 at 310.434 kb on + strand, within Ac3H11_1708 at 310.435 kb on - strand, within Ac3H11_1708 at 310.435 kb on - strand, within Ac3H11_1708 at 310.435 kb on - strand, within Ac3H11_1708 at 310.435 kb on - strand, within Ac3H11_1708 at 310.488 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.500 kb on + strand, within Ac3H11_1708 at 310.501 kb on - strand, within Ac3H11_1708 at 310.501 kb on - strand, within Ac3H11_1708 at 310.815 kb on - strand at 310.857 kb on - strand at 311.087 kb on + strand, within Ac3H11_1709 at 311.400 kb on + strand at 311.400 kb on + strand at 311.400 kb on + strand at 311.400 kb on + strand at 311.400 kb on + strand at 311.401 kb on - strand at 311.474 kb on + strand at 311.475 kb on - strand at 311.518 kb on + strand, within Ac3H11_1710 at 311.519 kb on - strand, within Ac3H11_1710 at 312.127 kb on + strand at 312.128 kb on - strand at 312.145 kb on + strand at 312.145 kb on + strand at 312.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml remove 310,147 + -0.8 310,147 + +0.4 310,148 - +1.0 310,185 + +2.3 310,185 + +1.4 310,185 + -1.6 310,186 - -2.5 310,186 - +1.8 310,186 - -2.1 310,221 + -0.1 310,335 - -2.0 310,335 - +0.4 310,335 - +0.1 310,335 - -1.4 310,335 - -0.9 310,410 + Ac3H11_1708 0.32 +2.5 310,411 - Ac3H11_1708 0.33 -2.3 310,419 + Ac3H11_1708 0.35 +2.6 310,419 + Ac3H11_1708 0.35 -0.2 310,419 + Ac3H11_1708 0.35 -2.0 310,419 + Ac3H11_1708 0.35 +0.7 310,419 + Ac3H11_1708 0.35 +0.4 310,419 + Ac3H11_1708 0.35 -0.4 310,420 - Ac3H11_1708 0.36 -0.7 310,420 - Ac3H11_1708 0.36 +0.0 310,420 - Ac3H11_1708 0.36 -0.9 310,420 - Ac3H11_1708 0.36 -1.2 310,434 + Ac3H11_1708 0.40 -0.6 310,434 + Ac3H11_1708 0.40 -0.2 310,434 + Ac3H11_1708 0.40 +0.7 310,435 - Ac3H11_1708 0.41 +0.5 310,435 - Ac3H11_1708 0.41 +0.4 310,435 - Ac3H11_1708 0.41 +1.3 310,435 - Ac3H11_1708 0.41 +0.4 310,488 + Ac3H11_1708 0.58 +1.1 310,500 + Ac3H11_1708 0.62 -2.7 310,500 + Ac3H11_1708 0.62 -0.7 310,500 + Ac3H11_1708 0.62 -2.7 310,500 + Ac3H11_1708 0.62 -0.7 310,500 + Ac3H11_1708 0.62 -0.2 310,501 - Ac3H11_1708 0.62 -1.8 310,501 - Ac3H11_1708 0.62 +0.6 310,815 - -0.5 310,857 - -2.0 311,087 + Ac3H11_1709 0.47 -1.3 311,400 + -2.6 311,400 + +0.8 311,400 + -0.9 311,400 + -3.1 311,400 + -1.8 311,401 - +0.6 311,474 + -0.0 311,475 - +0.2 311,518 + Ac3H11_1710 0.13 -0.5 311,519 - Ac3H11_1710 0.13 -0.5 312,127 + +1.8 312,128 - +1.1 312,145 + +1.8 312,145 + +2.4 312,146 - +1.0
Or see this region's nucleotide sequence