Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1706

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1705 and Ac3H11_1706 are separated by 181 nucleotidesAc3H11_1706 and Ac3H11_1707 are separated by 177 nucleotides Ac3H11_1705 - Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1), at 305,590 to 306,804 _1705 Ac3H11_1706 - Fmu (Sun) /eukaryotic nucleolar NOL1/Nop2p; tRNA and rRNA cytosine-C5-methylases, at 306,986 to 308,260 _1706 Ac3H11_1707 - FIG00933533: hypothetical protein, at 308,438 to 310,291 _1707 Position (kb) 306 307 308 309Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 306.071 kb on + strand, within Ac3H11_1705at 306.071 kb on + strand, within Ac3H11_1705at 306.071 kb on + strand, within Ac3H11_1705at 306.072 kb on - strand, within Ac3H11_1705at 306.095 kb on + strand, within Ac3H11_1705at 306.128 kb on + strand, within Ac3H11_1705at 306.129 kb on - strand, within Ac3H11_1705at 306.230 kb on + strand, within Ac3H11_1705at 306.231 kb on - strand, within Ac3H11_1705at 306.231 kb on - strand, within Ac3H11_1705at 306.231 kb on - strand, within Ac3H11_1705at 306.331 kb on - strand, within Ac3H11_1705at 306.331 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.375 kb on - strand, within Ac3H11_1705at 306.713 kb on + strandat 306.713 kb on + strandat 306.713 kb on + strandat 306.713 kb on + strandat 306.713 kb on + strandat 306.713 kb on + strandat 306.713 kb on + strandat 306.714 kb on - strandat 306.714 kb on - strandat 306.714 kb on - strandat 306.804 kb on + strandat 306.804 kb on + strandat 306.805 kb on - strandat 306.805 kb on - strandat 306.805 kb on - strandat 306.805 kb on - strandat 306.805 kb on - strandat 306.805 kb on - strandat 306.805 kb on - strandat 306.820 kb on + strandat 306.820 kb on + strandat 306.821 kb on - strandat 306.821 kb on - strandat 306.823 kb on + strandat 306.824 kb on - strandat 306.824 kb on - strandat 306.906 kb on + strandat 306.906 kb on + strandat 306.906 kb on + strandat 306.917 kb on - strandat 307.056 kb on + strandat 307.056 kb on + strandat 307.056 kb on + strandat 307.218 kb on + strand, within Ac3H11_1706at 307.218 kb on + strand, within Ac3H11_1706at 307.218 kb on + strand, within Ac3H11_1706at 307.219 kb on - strand, within Ac3H11_1706at 307.219 kb on - strand, within Ac3H11_1706at 307.219 kb on - strand, within Ac3H11_1706at 307.219 kb on - strand, within Ac3H11_1706at 307.219 kb on - strand, within Ac3H11_1706at 307.518 kb on + strand, within Ac3H11_1706at 307.519 kb on - strand, within Ac3H11_1706at 307.519 kb on - strand, within Ac3H11_1706at 307.532 kb on - strand, within Ac3H11_1706at 307.732 kb on - strand, within Ac3H11_1706at 308.019 kb on + strand, within Ac3H11_1706at 308.019 kb on + strand, within Ac3H11_1706at 308.019 kb on + strand, within Ac3H11_1706at 308.019 kb on + strand, within Ac3H11_1706at 308.020 kb on - strand, within Ac3H11_1706at 308.020 kb on - strand, within Ac3H11_1706at 308.109 kb on + strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.110 kb on - strand, within Ac3H11_1706at 308.446 kb on + strandat 308.446 kb on + strandat 308.447 kb on - strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.448 kb on + strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.449 kb on - strandat 308.566 kb on - strandat 308.610 kb on + strandat 308.610 kb on + strandat 308.610 kb on + strandat 308.611 kb on - strandat 308.611 kb on - strandat 308.611 kb on - strandat 308.611 kb on - strandat 308.898 kb on + strand, within Ac3H11_1707at 308.934 kb on - strand, within Ac3H11_1707at 308.934 kb on - strand, within Ac3H11_1707at 308.934 kb on - strand, within Ac3H11_1707at 309.034 kb on - strand, within Ac3H11_1707at 309.034 kb on - strand, within Ac3H11_1707

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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306,071 + Ac3H11_1705 0.40 -3.5
306,071 + Ac3H11_1705 0.40 -3.1
306,071 + Ac3H11_1705 0.40 -0.7
306,072 - Ac3H11_1705 0.40 +1.7
306,095 + Ac3H11_1705 0.42 +0.8
306,128 + Ac3H11_1705 0.44 +0.8
306,129 - Ac3H11_1705 0.44 -0.0
306,230 + Ac3H11_1705 0.53 +1.2
306,231 - Ac3H11_1705 0.53 -2.5
306,231 - Ac3H11_1705 0.53 +1.2
306,231 - Ac3H11_1705 0.53 -2.4
306,331 - Ac3H11_1705 0.61 -1.0
306,331 - Ac3H11_1705 0.61 -0.3
306,375 - Ac3H11_1705 0.65 -3.3
306,375 - Ac3H11_1705 0.65 +1.6
306,375 - Ac3H11_1705 0.65 -3.0
306,375 - Ac3H11_1705 0.65 -0.0
306,375 - Ac3H11_1705 0.65 -0.1
306,375 - Ac3H11_1705 0.65 -1.9
306,713 + -2.0
306,713 + +0.8
306,713 + -3.1
306,713 + +1.8
306,713 + +0.8
306,713 + +1.0
306,713 + -0.1
306,714 - -0.5
306,714 - -3.1
306,714 - -0.2
306,804 + -0.4
306,804 + -0.5
306,805 - +0.4
306,805 - -3.3
306,805 - +0.3
306,805 - -1.7
306,805 - +1.8
306,805 - -0.8
306,805 - -0.1
306,820 + -0.2
306,820 + -0.8
306,821 - +1.5
306,821 - +0.2
306,823 + +2.1
306,824 - -2.0
306,824 - +0.7
306,906 + -0.6
306,906 + -1.7
306,906 + +1.0
306,917 - -1.2
307,056 + -1.9
307,056 + -2.2
307,056 + -0.7
307,218 + Ac3H11_1706 0.18 -0.1
307,218 + Ac3H11_1706 0.18 -1.3
307,218 + Ac3H11_1706 0.18 +0.1
307,219 - Ac3H11_1706 0.18 -0.2
307,219 - Ac3H11_1706 0.18 -1.6
307,219 - Ac3H11_1706 0.18 -1.8
307,219 - Ac3H11_1706 0.18 -2.4
307,219 - Ac3H11_1706 0.18 -0.8
307,518 + Ac3H11_1706 0.42 -0.1
307,519 - Ac3H11_1706 0.42 -1.3
307,519 - Ac3H11_1706 0.42 -1.5
307,532 - Ac3H11_1706 0.43 +0.1
307,732 - Ac3H11_1706 0.59 +1.1
308,019 + Ac3H11_1706 0.81 -2.9
308,019 + Ac3H11_1706 0.81 -2.0
308,019 + Ac3H11_1706 0.81 -1.9
308,019 + Ac3H11_1706 0.81 -1.5
308,020 - Ac3H11_1706 0.81 -0.5
308,020 - Ac3H11_1706 0.81 -1.7
308,109 + Ac3H11_1706 0.88 -0.7
308,110 - Ac3H11_1706 0.88 -2.1
308,110 - Ac3H11_1706 0.88 -1.2
308,110 - Ac3H11_1706 0.88 -0.0
308,110 - Ac3H11_1706 0.88 +0.2
308,110 - Ac3H11_1706 0.88 +0.4
308,110 - Ac3H11_1706 0.88 +2.0
308,110 - Ac3H11_1706 0.88 +1.3
308,446 + +1.0
308,446 + -0.2
308,447 - -2.1
308,448 + -0.5
308,448 + -2.2
308,448 + +0.5
308,448 + -2.7
308,448 + -1.8
308,448 + +0.3
308,448 + -0.9
308,448 + +1.4
308,448 + +1.1
308,448 + -3.1
308,448 + -1.3
308,448 + +0.5
308,449 - -2.5
308,449 - +0.2
308,449 - +1.5
308,449 - +1.2
308,449 - -2.7
308,449 - +0.2
308,449 - -1.5
308,449 - +0.6
308,449 - +1.6
308,449 - -0.5
308,449 - -2.2
308,566 - +3.5
308,610 + -2.5
308,610 + -3.2
308,610 + +0.7
308,611 - -0.3
308,611 - +1.3
308,611 - -2.5
308,611 - -0.9
308,898 + Ac3H11_1707 0.25 +1.9
308,934 - Ac3H11_1707 0.27 -3.5
308,934 - Ac3H11_1707 0.27 +0.9
308,934 - Ac3H11_1707 0.27 -0.1
309,034 - Ac3H11_1707 0.32 -0.4
309,034 - Ac3H11_1707 0.32 +1.3

Or see this region's nucleotide sequence