Experiment: Paraquat dichloride 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_167 and Ac3H11_168 are separated by 115 nucleotides Ac3H11_168 and Ac3H11_169 are separated by 4 nucleotides Ac3H11_169 and Ac3H11_170 are separated by 45 nucleotides
Ac3H11_167 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 52,612 to 55,524
_167
Ac3H11_168 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8), at 55,640 to 56,044
_168
Ac3H11_169 - Albicidin resistance protein, at 56,049 to 57,101
_169
Ac3H11_170 - Glucans biosynthesis protein C (EC 2.1.-.-), at 57,147 to 58,427
_170
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 55.051 kb on + strand, within Ac3H11_167 at 55.051 kb on + strand, within Ac3H11_167 at 55.052 kb on - strand, within Ac3H11_167 at 55.052 kb on - strand, within Ac3H11_167 at 55.387 kb on + strand at 55.387 kb on + strand at 55.408 kb on + strand at 55.438 kb on + strand at 55.438 kb on + strand at 55.438 kb on + strand at 55.439 kb on - strand at 55.439 kb on - strand at 55.516 kb on + strand at 55.516 kb on + strand at 55.517 kb on - strand at 55.599 kb on + strand at 55.627 kb on + strand at 55.628 kb on - strand at 55.736 kb on + strand, within Ac3H11_168 at 55.736 kb on + strand, within Ac3H11_168 at 55.737 kb on - strand, within Ac3H11_168 at 55.737 kb on - strand, within Ac3H11_168 at 55.737 kb on - strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.799 kb on + strand, within Ac3H11_168 at 55.800 kb on - strand, within Ac3H11_168 at 55.800 kb on - strand, within Ac3H11_168 at 55.842 kb on - strand, within Ac3H11_168 at 56.091 kb on - strand at 56.112 kb on + strand at 56.112 kb on + strand at 56.112 kb on + strand at 56.112 kb on + strand at 56.113 kb on - strand at 56.113 kb on - strand at 56.169 kb on + strand, within Ac3H11_169 at 56.169 kb on + strand, within Ac3H11_169 at 56.270 kb on - strand, within Ac3H11_169 at 56.270 kb on - strand, within Ac3H11_169 at 56.270 kb on - strand, within Ac3H11_169 at 56.270 kb on - strand, within Ac3H11_169 at 56.434 kb on - strand, within Ac3H11_169 at 56.434 kb on - strand, within Ac3H11_169 at 56.443 kb on - strand, within Ac3H11_169 at 56.583 kb on + strand, within Ac3H11_169 at 56.716 kb on - strand, within Ac3H11_169 at 57.022 kb on - strand at 57.147 kb on - strand at 57.147 kb on - strand at 57.147 kb on - strand at 57.147 kb on - strand at 57.264 kb on + strand at 57.264 kb on + strand at 57.264 kb on + strand at 57.370 kb on + strand, within Ac3H11_170 at 57.371 kb on - strand, within Ac3H11_170 at 57.783 kb on + strand, within Ac3H11_170 at 57.783 kb on + strand, within Ac3H11_170 at 57.858 kb on + strand, within Ac3H11_170 at 57.858 kb on + strand, within Ac3H11_170 at 57.879 kb on + strand, within Ac3H11_170 at 57.879 kb on + strand, within Ac3H11_170 at 57.879 kb on + strand, within Ac3H11_170 at 57.879 kb on + strand, within Ac3H11_170 at 57.880 kb on - strand, within Ac3H11_170
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml remove 55,051 + Ac3H11_167 0.84 +1.1 55,051 + Ac3H11_167 0.84 +1.0 55,052 - Ac3H11_167 0.84 -0.9 55,052 - Ac3H11_167 0.84 +1.4 55,387 + -3.4 55,387 + +2.5 55,408 + -4.0 55,438 + -0.9 55,438 + +0.8 55,438 + -0.7 55,439 - -3.6 55,439 - +0.6 55,516 + -0.2 55,516 + +0.3 55,517 - +0.7 55,599 + -2.6 55,627 + +0.0 55,628 - -0.0 55,736 + Ac3H11_168 0.24 -0.8 55,736 + Ac3H11_168 0.24 -0.6 55,737 - Ac3H11_168 0.24 -3.1 55,737 - Ac3H11_168 0.24 +0.8 55,737 - Ac3H11_168 0.24 -1.4 55,799 + Ac3H11_168 0.39 -2.1 55,799 + Ac3H11_168 0.39 -1.6 55,799 + Ac3H11_168 0.39 +2.6 55,799 + Ac3H11_168 0.39 -3.0 55,799 + Ac3H11_168 0.39 +2.0 55,799 + Ac3H11_168 0.39 +1.3 55,799 + Ac3H11_168 0.39 -0.9 55,799 + Ac3H11_168 0.39 -1.6 55,799 + Ac3H11_168 0.39 -0.6 55,800 - Ac3H11_168 0.40 +1.4 55,800 - Ac3H11_168 0.40 -0.6 55,842 - Ac3H11_168 0.50 -2.9 56,091 - +1.3 56,112 + +0.4 56,112 + -1.7 56,112 + +0.6 56,112 + +0.3 56,113 - +0.1 56,113 - -2.1 56,169 + Ac3H11_169 0.11 +0.6 56,169 + Ac3H11_169 0.11 +1.0 56,270 - Ac3H11_169 0.21 +0.4 56,270 - Ac3H11_169 0.21 +2.2 56,270 - Ac3H11_169 0.21 -0.7 56,270 - Ac3H11_169 0.21 +1.4 56,434 - Ac3H11_169 0.37 +0.3 56,434 - Ac3H11_169 0.37 -1.4 56,443 - Ac3H11_169 0.37 +2.0 56,583 + Ac3H11_169 0.51 +1.2 56,716 - Ac3H11_169 0.63 -0.0 57,022 - -0.2 57,147 - -0.4 57,147 - -1.6 57,147 - +0.4 57,147 - -0.9 57,264 + +1.7 57,264 + -1.1 57,264 + +1.6 57,370 + Ac3H11_170 0.17 +0.5 57,371 - Ac3H11_170 0.17 +1.9 57,783 + Ac3H11_170 0.50 +0.1 57,783 + Ac3H11_170 0.50 +1.7 57,858 + Ac3H11_170 0.56 -0.4 57,858 + Ac3H11_170 0.56 +0.0 57,879 + Ac3H11_170 0.57 +1.5 57,879 + Ac3H11_170 0.57 +0.6 57,879 + Ac3H11_170 0.57 +0.0 57,879 + Ac3H11_170 0.57 +2.1 57,880 - Ac3H11_170 0.57 -1.5
Or see this region's nucleotide sequence