Experiment: Paraquat dichloride 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1346 and Ac3H11_1347 are separated by 178 nucleotides Ac3H11_1347 and Ac3H11_1348 are separated by 48 nucleotides Ac3H11_1348 and Ac3H11_1349 are separated by 48 nucleotides
Ac3H11_1346 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 39,078 to 39,830
_1346
Ac3H11_1347 - hypothetical protein, at 40,009 to 40,308
_1347
Ac3H11_1348 - Creatinine amidohydrolase (EC 3.5.2.10), at 40,357 to 41,220
_1348
Ac3H11_1349 - hypothetical protein, at 41,269 to 41,745
_1349
Position (kb) 40
41 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 39.727 kb on + strand, within Ac3H11_1346 at 39.800 kb on - strand at 39.881 kb on + strand at 39.882 kb on - strand at 39.882 kb on - strand at 39.882 kb on - strand at 39.939 kb on + strand at 39.940 kb on - strand at 39.945 kb on + strand at 39.945 kb on + strand at 39.946 kb on - strand at 40.072 kb on + strand, within Ac3H11_1347 at 40.072 kb on + strand, within Ac3H11_1347 at 40.072 kb on + strand, within Ac3H11_1347 at 40.073 kb on - strand, within Ac3H11_1347 at 40.073 kb on - strand, within Ac3H11_1347 at 40.073 kb on - strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.088 kb on - strand, within Ac3H11_1347 at 41.277 kb on - strand at 41.277 kb on - strand at 41.279 kb on + strand at 41.279 kb on + strand at 41.280 kb on - strand at 41.280 kb on - strand at 41.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml remove 39,727 + Ac3H11_1346 0.86 +0.8 39,800 - -3.1 39,881 + -1.7 39,882 - +1.2 39,882 - +1.9 39,882 - -1.2 39,939 + -2.3 39,940 - -1.9 39,945 + +0.7 39,945 + +0.2 39,946 - +1.2 40,072 + Ac3H11_1347 0.21 -0.5 40,072 + Ac3H11_1347 0.21 -0.1 40,072 + Ac3H11_1347 0.21 +1.1 40,073 - Ac3H11_1347 0.21 +0.5 40,073 - Ac3H11_1347 0.21 +2.8 40,073 - Ac3H11_1347 0.21 -0.2 40,087 + Ac3H11_1347 0.26 +2.3 40,087 + Ac3H11_1347 0.26 +0.1 40,087 + Ac3H11_1347 0.26 -3.8 40,087 + Ac3H11_1347 0.26 +0.3 40,087 + Ac3H11_1347 0.26 +1.4 40,087 + Ac3H11_1347 0.26 -3.1 40,088 - Ac3H11_1347 0.26 +1.2 41,277 - +0.8 41,277 - +1.9 41,279 + +1.7 41,279 + +1.4 41,280 - +0.4 41,280 - -2.1 41,280 - +1.6
Or see this region's nucleotide sequence