Experiment: Paraquat dichloride 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1345 and Ac3H11_1346 are separated by 163 nucleotides Ac3H11_1346 and Ac3H11_1347 are separated by 178 nucleotides Ac3H11_1347 and Ac3H11_1348 are separated by 48 nucleotides
Ac3H11_1345 - putative exported protein, at 35,072 to 38,914
_1345
Ac3H11_1346 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 39,078 to 39,830
_1346
Ac3H11_1347 - hypothetical protein, at 40,009 to 40,308
_1347
Ac3H11_1348 - Creatinine amidohydrolase (EC 3.5.2.10), at 40,357 to 41,220
_1348
Position (kb) 39
40 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 38.160 kb on + strand, within Ac3H11_1345 at 38.160 kb on + strand, within Ac3H11_1345 at 38.161 kb on - strand, within Ac3H11_1345 at 38.161 kb on - strand, within Ac3H11_1345 at 38.161 kb on - strand, within Ac3H11_1345 at 38.169 kb on + strand, within Ac3H11_1345 at 38.169 kb on + strand, within Ac3H11_1345 at 38.169 kb on + strand, within Ac3H11_1345 at 38.170 kb on - strand, within Ac3H11_1345 at 38.170 kb on - strand, within Ac3H11_1345 at 38.170 kb on - strand, within Ac3H11_1345 at 38.170 kb on - strand, within Ac3H11_1345 at 38.170 kb on - strand, within Ac3H11_1345 at 38.424 kb on + strand, within Ac3H11_1345 at 38.424 kb on + strand, within Ac3H11_1345 at 38.424 kb on + strand, within Ac3H11_1345 at 38.425 kb on - strand, within Ac3H11_1345 at 38.425 kb on - strand, within Ac3H11_1345 at 38.425 kb on - strand, within Ac3H11_1345 at 38.508 kb on + strand, within Ac3H11_1345 at 38.509 kb on - strand, within Ac3H11_1345 at 38.613 kb on + strand at 38.613 kb on + strand at 38.614 kb on - strand at 38.614 kb on - strand at 38.614 kb on - strand at 38.614 kb on - strand at 38.614 kb on - strand at 38.977 kb on + strand at 39.727 kb on + strand, within Ac3H11_1346 at 39.800 kb on - strand at 39.881 kb on + strand at 39.882 kb on - strand at 39.882 kb on - strand at 39.882 kb on - strand at 39.939 kb on + strand at 39.940 kb on - strand at 39.945 kb on + strand at 39.945 kb on + strand at 39.946 kb on - strand at 40.072 kb on + strand, within Ac3H11_1347 at 40.072 kb on + strand, within Ac3H11_1347 at 40.072 kb on + strand, within Ac3H11_1347 at 40.073 kb on - strand, within Ac3H11_1347 at 40.073 kb on - strand, within Ac3H11_1347 at 40.073 kb on - strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.087 kb on + strand, within Ac3H11_1347 at 40.088 kb on - strand, within Ac3H11_1347
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml remove 38,160 + Ac3H11_1345 0.80 +0.3 38,160 + Ac3H11_1345 0.80 -0.7 38,161 - Ac3H11_1345 0.80 -0.1 38,161 - Ac3H11_1345 0.80 +0.4 38,161 - Ac3H11_1345 0.80 -0.7 38,169 + Ac3H11_1345 0.81 -0.8 38,169 + Ac3H11_1345 0.81 -0.7 38,169 + Ac3H11_1345 0.81 -0.5 38,170 - Ac3H11_1345 0.81 +0.1 38,170 - Ac3H11_1345 0.81 +0.4 38,170 - Ac3H11_1345 0.81 +1.3 38,170 - Ac3H11_1345 0.81 -0.8 38,170 - Ac3H11_1345 0.81 -1.7 38,424 + Ac3H11_1345 0.87 +0.0 38,424 + Ac3H11_1345 0.87 +0.1 38,424 + Ac3H11_1345 0.87 -1.1 38,425 - Ac3H11_1345 0.87 +1.5 38,425 - Ac3H11_1345 0.87 -0.3 38,425 - Ac3H11_1345 0.87 -0.1 38,508 + Ac3H11_1345 0.89 +1.6 38,509 - Ac3H11_1345 0.89 -1.5 38,613 + +0.8 38,613 + +0.0 38,614 - -0.6 38,614 - +0.0 38,614 - -0.8 38,614 - +0.3 38,614 - -1.5 38,977 + -1.9 39,727 + Ac3H11_1346 0.86 +0.8 39,800 - -3.1 39,881 + -1.7 39,882 - +1.2 39,882 - +1.9 39,882 - -1.2 39,939 + -2.3 39,940 - -1.9 39,945 + +0.7 39,945 + +0.2 39,946 - +1.2 40,072 + Ac3H11_1347 0.21 -0.5 40,072 + Ac3H11_1347 0.21 -0.1 40,072 + Ac3H11_1347 0.21 +1.1 40,073 - Ac3H11_1347 0.21 +0.5 40,073 - Ac3H11_1347 0.21 +2.8 40,073 - Ac3H11_1347 0.21 -0.2 40,087 + Ac3H11_1347 0.26 +2.3 40,087 + Ac3H11_1347 0.26 +0.1 40,087 + Ac3H11_1347 0.26 -3.8 40,087 + Ac3H11_1347 0.26 +0.3 40,087 + Ac3H11_1347 0.26 +1.4 40,087 + Ac3H11_1347 0.26 -3.1 40,088 - Ac3H11_1347 0.26 +1.2
Or see this region's nucleotide sequence