Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1336

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1334 and Ac3H11_1335 are separated by 90 nucleotidesAc3H11_1335 and Ac3H11_1336 are separated by 14 nucleotidesAc3H11_1336 and Ac3H11_1337 overlap by 4 nucleotides Ac3H11_1334 - hypothetical protein, at 22,750 to 23,430 _1334 Ac3H11_1335 - hypothetical protein, at 23,521 to 23,763 _1335 Ac3H11_1336 - Ferrous iron transport protein B, at 23,778 to 25,703 _1336 Ac3H11_1337 - Ferrous iron transport protein, at 25,700 to 26,038 _1337 Position (kb) 23 24 25 26Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 22.779 kb on + strandat 22.780 kb on - strandat 22.780 kb on - strandat 22.780 kb on - strandat 22.894 kb on + strand, within Ac3H11_1334at 22.895 kb on - strand, within Ac3H11_1334at 23.017 kb on + strand, within Ac3H11_1334at 23.017 kb on + strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.018 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.222 kb on - strand, within Ac3H11_1334at 23.254 kb on + strand, within Ac3H11_1334at 23.254 kb on + strand, within Ac3H11_1334at 23.254 kb on + strand, within Ac3H11_1334at 23.278 kb on + strand, within Ac3H11_1334at 23.278 kb on + strand, within Ac3H11_1334at 23.278 kb on + strand, within Ac3H11_1334at 23.278 kb on + strand, within Ac3H11_1334at 23.332 kb on + strand, within Ac3H11_1334at 23.332 kb on + strand, within Ac3H11_1334at 23.332 kb on + strand, within Ac3H11_1334at 23.332 kb on + strand, within Ac3H11_1334at 23.333 kb on - strand, within Ac3H11_1334at 23.333 kb on - strand, within Ac3H11_1334at 23.359 kb on + strand, within Ac3H11_1334at 23.360 kb on - strand, within Ac3H11_1334at 23.484 kb on + strandat 23.502 kb on - strandat 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.714 kb on + strand, within Ac3H11_1335at 23.715 kb on - strand, within Ac3H11_1335at 23.764 kb on - strandat 23.809 kb on + strandat 23.810 kb on - strandat 23.810 kb on - strandat 23.810 kb on - strandat 23.830 kb on + strandat 23.831 kb on - strandat 23.831 kb on - strandat 23.848 kb on + strandat 23.848 kb on + strandat 23.849 kb on - strandat 23.849 kb on - strandat 23.849 kb on - strandat 23.935 kb on + strandat 23.935 kb on + strandat 23.935 kb on + strandat 23.935 kb on + strandat 23.935 kb on + strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 23.936 kb on - strandat 24.034 kb on + strand, within Ac3H11_1336at 24.035 kb on - strand, within Ac3H11_1336at 24.035 kb on - strand, within Ac3H11_1336at 24.035 kb on - strand, within Ac3H11_1336at 24.169 kb on + strand, within Ac3H11_1336at 24.169 kb on + strand, within Ac3H11_1336at 24.169 kb on + strand, within Ac3H11_1336at 24.169 kb on + strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.170 kb on - strand, within Ac3H11_1336at 24.211 kb on + strand, within Ac3H11_1336at 24.211 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.430 kb on + strand, within Ac3H11_1336at 24.431 kb on - strand, within Ac3H11_1336at 24.431 kb on - strand, within Ac3H11_1336at 24.431 kb on - strand, within Ac3H11_1336at 24.514 kb on + strand, within Ac3H11_1336at 24.514 kb on + strand, within Ac3H11_1336at 24.514 kb on + strand, within Ac3H11_1336at 24.514 kb on + strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 24.515 kb on - strand, within Ac3H11_1336at 25.272 kb on + strand, within Ac3H11_1336at 25.272 kb on + strand, within Ac3H11_1336at 25.273 kb on - strand, within Ac3H11_1336at 25.273 kb on - strand, within Ac3H11_1336at 25.570 kb on + strandat 25.570 kb on + strandat 25.570 kb on + strandat 25.570 kb on + strandat 25.571 kb on - strandat 25.571 kb on - strandat 25.645 kb on - strandat 26.199 kb on + strandat 26.199 kb on + strandat 26.199 kb on + strandat 26.199 kb on + strandat 26.200 kb on - strandat 26.200 kb on - strandat 26.200 kb on - strandat 26.200 kb on - strandat 26.200 kb on - strandat 26.304 kb on + strandat 26.370 kb on + strandat 26.370 kb on + strandat 26.371 kb on - strandat 26.468 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.477 kb on + strandat 26.478 kb on - strandat 26.478 kb on - strandat 26.520 kb on + strandat 26.520 kb on + strandat 26.521 kb on - strandat 26.521 kb on - strandat 26.527 kb on - strandat 26.538 kb on + strandat 26.538 kb on + strandat 26.538 kb on + strandat 26.538 kb on + strandat 26.539 kb on - strandat 26.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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22,779 + -0.6
22,780 - +0.2
22,780 - -0.7
22,780 - +1.1
22,894 + Ac3H11_1334 0.21 -2.0
22,895 - Ac3H11_1334 0.21 +0.7
23,017 + Ac3H11_1334 0.39 -0.6
23,017 + Ac3H11_1334 0.39 -0.8
23,018 - Ac3H11_1334 0.39 +0.4
23,018 - Ac3H11_1334 0.39 -0.6
23,018 - Ac3H11_1334 0.39 -3.1
23,018 - Ac3H11_1334 0.39 +2.6
23,018 - Ac3H11_1334 0.39 +2.6
23,222 - Ac3H11_1334 0.69 +1.6
23,222 - Ac3H11_1334 0.69 -1.9
23,222 - Ac3H11_1334 0.69 +0.9
23,222 - Ac3H11_1334 0.69 -0.5
23,222 - Ac3H11_1334 0.69 +1.2
23,254 + Ac3H11_1334 0.74 +1.4
23,254 + Ac3H11_1334 0.74 +0.9
23,254 + Ac3H11_1334 0.74 -1.3
23,278 + Ac3H11_1334 0.78 -0.3
23,278 + Ac3H11_1334 0.78 +0.5
23,278 + Ac3H11_1334 0.78 -0.8
23,278 + Ac3H11_1334 0.78 +1.0
23,332 + Ac3H11_1334 0.85 +0.9
23,332 + Ac3H11_1334 0.85 +0.0
23,332 + Ac3H11_1334 0.85 +0.5
23,332 + Ac3H11_1334 0.85 -1.7
23,333 - Ac3H11_1334 0.86 -1.3
23,333 - Ac3H11_1334 0.86 -0.9
23,359 + Ac3H11_1334 0.89 -2.3
23,360 - Ac3H11_1334 0.90 +0.1
23,484 + -2.4
23,502 - +0.6
23,714 + Ac3H11_1335 0.79 -0.2
23,714 + Ac3H11_1335 0.79 +0.1
23,714 + Ac3H11_1335 0.79 -2.4
23,714 + Ac3H11_1335 0.79 -0.5
23,714 + Ac3H11_1335 0.79 -0.5
23,714 + Ac3H11_1335 0.79 +0.8
23,715 - Ac3H11_1335 0.80 -0.8
23,764 - +0.5
23,809 + +1.8
23,810 - -0.7
23,810 - -0.1
23,810 - -2.1
23,830 + -2.7
23,831 - +1.3
23,831 - +1.4
23,848 + +2.1
23,848 + -0.8
23,849 - +1.3
23,849 - +0.5
23,849 - +0.9
23,935 + +1.5
23,935 + -1.6
23,935 + -0.4
23,935 + +1.5
23,935 + -0.2
23,936 - -0.1
23,936 - +1.8
23,936 - +0.7
23,936 - +0.6
23,936 - +1.1
23,936 - -3.9
23,936 - +0.3
24,034 + Ac3H11_1336 0.13 +1.5
24,035 - Ac3H11_1336 0.13 -0.4
24,035 - Ac3H11_1336 0.13 -1.2
24,035 - Ac3H11_1336 0.13 +1.4
24,169 + Ac3H11_1336 0.20 -0.8
24,169 + Ac3H11_1336 0.20 -0.8
24,169 + Ac3H11_1336 0.20 -1.1
24,169 + Ac3H11_1336 0.20 -0.1
24,170 - Ac3H11_1336 0.20 +1.9
24,170 - Ac3H11_1336 0.20 -1.8
24,170 - Ac3H11_1336 0.20 +2.3
24,170 - Ac3H11_1336 0.20 -1.5
24,170 - Ac3H11_1336 0.20 +0.5
24,211 + Ac3H11_1336 0.22 -0.4
24,211 + Ac3H11_1336 0.22 -2.1
24,430 + Ac3H11_1336 0.34 +0.1
24,430 + Ac3H11_1336 0.34 +0.8
24,430 + Ac3H11_1336 0.34 -0.3
24,430 + Ac3H11_1336 0.34 +0.6
24,430 + Ac3H11_1336 0.34 +1.1
24,430 + Ac3H11_1336 0.34 +1.5
24,430 + Ac3H11_1336 0.34 +1.4
24,430 + Ac3H11_1336 0.34 -2.1
24,430 + Ac3H11_1336 0.34 -2.5
24,430 + Ac3H11_1336 0.34 -0.2
24,431 - Ac3H11_1336 0.34 +0.9
24,431 - Ac3H11_1336 0.34 +1.4
24,431 - Ac3H11_1336 0.34 +0.8
24,514 + Ac3H11_1336 0.38 -1.8
24,514 + Ac3H11_1336 0.38 -1.9
24,514 + Ac3H11_1336 0.38 -0.8
24,514 + Ac3H11_1336 0.38 +1.1
24,515 - Ac3H11_1336 0.38 +0.9
24,515 - Ac3H11_1336 0.38 +0.3
24,515 - Ac3H11_1336 0.38 -1.6
24,515 - Ac3H11_1336 0.38 +0.2
24,515 - Ac3H11_1336 0.38 +0.6
24,515 - Ac3H11_1336 0.38 +0.2
25,272 + Ac3H11_1336 0.78 +1.6
25,272 + Ac3H11_1336 0.78 +0.9
25,273 - Ac3H11_1336 0.78 -0.6
25,273 - Ac3H11_1336 0.78 -0.5
25,570 + +1.0
25,570 + -3.6
25,570 + -1.6
25,570 + -0.3
25,571 - +0.8
25,571 - -0.1
25,645 - +0.9
26,199 + +1.3
26,199 + +2.7
26,199 + +0.1
26,199 + +2.2
26,200 - -1.3
26,200 - -0.4
26,200 - +1.3
26,200 - -2.4
26,200 - +0.2
26,304 + -0.7
26,370 + +1.0
26,370 + -1.5
26,371 - +2.1
26,468 + -0.6
26,477 + +0.8
26,477 + -0.5
26,477 + -3.1
26,477 + -1.9
26,477 + +1.5
26,477 + -1.8
26,477 + -1.1
26,477 + -0.9
26,478 - +1.5
26,478 - +1.6
26,520 + +1.0
26,520 + -0.4
26,521 - +0.8
26,521 - +0.5
26,527 - +0.4
26,538 + -1.4
26,538 + +0.6
26,538 + -0.3
26,538 + +0.5
26,539 - -1.1
26,700 - +1.0

Or see this region's nucleotide sequence