Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1262

Experiment: Paraquat dichloride 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1261 and Ac3H11_1262 are separated by 53 nucleotidesAc3H11_1262 and Ac3H11_1263 are separated by 148 nucleotidesAc3H11_1263 and Ac3H11_1264 are separated by 80 nucleotides Ac3H11_1261 - Sensory histidine kinase QseC, at 79,953 to 81,308 _1261 Ac3H11_1262 - probable two-component system response regulator, at 81,362 to 82,018 _1262 Ac3H11_1263 - Response regulator receiver:Transcriptional regulatory protein, C- terminal, at 82,167 to 82,841 _1263 Ac3H11_1264 - Sensor protein basS/pmrB (EC 2.7.3.-), at 82,922 to 84,373 _1264 Position (kb) 81 82 83Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 80.946 kb on + strand, within Ac3H11_1261at 80.946 kb on + strand, within Ac3H11_1261at 80.946 kb on + strand, within Ac3H11_1261at 80.947 kb on - strand, within Ac3H11_1261at 81.726 kb on + strand, within Ac3H11_1262at 81.727 kb on - strand, within Ac3H11_1262at 81.727 kb on - strand, within Ac3H11_1262at 82.093 kb on + strandat 82.094 kb on - strandat 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.461 kb on + strand, within Ac3H11_1263at 82.462 kb on - strand, within Ac3H11_1263at 82.569 kb on + strand, within Ac3H11_1263at 82.569 kb on + strand, within Ac3H11_1263at 82.569 kb on + strand, within Ac3H11_1263at 82.570 kb on - strand, within Ac3H11_1263at 82.570 kb on - strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.746 kb on + strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.747 kb on - strand, within Ac3H11_1263at 82.842 kb on + strandat 82.842 kb on + strandat 82.843 kb on - strandat 82.843 kb on - strandat 82.857 kb on + strandat 82.858 kb on - strandat 82.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
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80,946 + Ac3H11_1261 0.73 +1.6
80,946 + Ac3H11_1261 0.73 +1.5
80,946 + Ac3H11_1261 0.73 +2.3
80,947 - Ac3H11_1261 0.73 -0.2
81,726 + Ac3H11_1262 0.55 -2.6
81,727 - Ac3H11_1262 0.56 +0.7
81,727 - Ac3H11_1262 0.56 +0.1
82,093 + -1.8
82,094 - +1.0
82,461 + Ac3H11_1263 0.44 +0.5
82,461 + Ac3H11_1263 0.44 +3.1
82,461 + Ac3H11_1263 0.44 -3.8
82,461 + Ac3H11_1263 0.44 +0.8
82,461 + Ac3H11_1263 0.44 -0.9
82,461 + Ac3H11_1263 0.44 +0.6
82,461 + Ac3H11_1263 0.44 -0.1
82,461 + Ac3H11_1263 0.44 +1.0
82,461 + Ac3H11_1263 0.44 +0.2
82,461 + Ac3H11_1263 0.44 +1.0
82,462 - Ac3H11_1263 0.44 -1.3
82,569 + Ac3H11_1263 0.60 -2.8
82,569 + Ac3H11_1263 0.60 +0.4
82,569 + Ac3H11_1263 0.60 -0.2
82,570 - Ac3H11_1263 0.60 +0.8
82,570 - Ac3H11_1263 0.60 +1.4
82,746 + Ac3H11_1263 0.86 +0.5
82,746 + Ac3H11_1263 0.86 +0.0
82,746 + Ac3H11_1263 0.86 +0.2
82,746 + Ac3H11_1263 0.86 +0.5
82,746 + Ac3H11_1263 0.86 +2.0
82,746 + Ac3H11_1263 0.86 -0.3
82,746 + Ac3H11_1263 0.86 -1.6
82,746 + Ac3H11_1263 0.86 +1.4
82,746 + Ac3H11_1263 0.86 +1.7
82,746 + Ac3H11_1263 0.86 +0.9
82,747 - Ac3H11_1263 0.86 +1.1
82,747 - Ac3H11_1263 0.86 +1.0
82,747 - Ac3H11_1263 0.86 +2.4
82,747 - Ac3H11_1263 0.86 +0.5
82,747 - Ac3H11_1263 0.86 +1.6
82,747 - Ac3H11_1263 0.86 +1.7
82,747 - Ac3H11_1263 0.86 +1.4
82,747 - Ac3H11_1263 0.86 -1.6
82,747 - Ac3H11_1263 0.86 -0.5
82,842 + +2.0
82,842 + +0.2
82,843 - +0.3
82,843 - -1.1
82,857 + -3.1
82,858 - +0.6
82,858 - +1.6

Or see this region's nucleotide sequence