Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1258

Experiment: Paraquat dichloride 0.01 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1257 and Ac3H11_1258 are separated by 108 nucleotidesAc3H11_1258 and Ac3H11_1259 are separated by 254 nucleotides Ac3H11_1257 - Transcriptional regulator, LysR family, at 75,383 to 76,354 _1257 Ac3H11_1258 - Tricarboxylate transport protein TctC, at 76,463 to 77,428 _1258 Ac3H11_1259 - N-formylglutamate deformylase (EC 3.5.1.68), at 77,683 to 78,615 _1259 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 75.514 kb on - strand, within Ac3H11_1257at 75.525 kb on + strand, within Ac3H11_1257at 75.867 kb on + strand, within Ac3H11_1257at 75.867 kb on + strand, within Ac3H11_1257at 75.867 kb on + strand, within Ac3H11_1257at 75.867 kb on + strand, within Ac3H11_1257at 75.867 kb on + strand, within Ac3H11_1257at 75.867 kb on + strand, within Ac3H11_1257at 75.867 kb on + strand, within Ac3H11_1257at 75.867 kb on + strand, within Ac3H11_1257at 75.868 kb on - strand, within Ac3H11_1257at 75.868 kb on - strand, within Ac3H11_1257at 75.868 kb on - strand, within Ac3H11_1257at 75.868 kb on - strand, within Ac3H11_1257at 75.868 kb on - strand, within Ac3H11_1257at 75.868 kb on - strand, within Ac3H11_1257at 75.868 kb on - strand, within Ac3H11_1257at 75.942 kb on + strand, within Ac3H11_1257at 75.942 kb on + strand, within Ac3H11_1257at 75.942 kb on + strand, within Ac3H11_1257at 75.942 kb on + strand, within Ac3H11_1257at 75.942 kb on + strand, within Ac3H11_1257at 75.942 kb on + strand, within Ac3H11_1257at 75.942 kb on + strand, within Ac3H11_1257at 75.943 kb on - strand, within Ac3H11_1257at 75.943 kb on - strand, within Ac3H11_1257at 75.943 kb on - strand, within Ac3H11_1257at 75.943 kb on - strand, within Ac3H11_1257at 75.943 kb on - strand, within Ac3H11_1257at 75.943 kb on - strand, within Ac3H11_1257at 75.954 kb on + strand, within Ac3H11_1257at 75.954 kb on + strand, within Ac3H11_1257at 75.954 kb on + strand, within Ac3H11_1257at 75.954 kb on + strand, within Ac3H11_1257at 75.954 kb on + strand, within Ac3H11_1257at 75.954 kb on + strand, within Ac3H11_1257at 75.954 kb on + strand, within Ac3H11_1257at 75.954 kb on + strand, within Ac3H11_1257at 75.954 kb on + strand, within Ac3H11_1257at 75.955 kb on - strand, within Ac3H11_1257at 75.955 kb on - strand, within Ac3H11_1257at 75.955 kb on - strand, within Ac3H11_1257at 75.955 kb on - strand, within Ac3H11_1257at 75.955 kb on - strand, within Ac3H11_1257at 76.399 kb on - strandat 76.448 kb on - strandat 76.763 kb on + strand, within Ac3H11_1258at 76.764 kb on - strand, within Ac3H11_1258at 76.778 kb on + strand, within Ac3H11_1258at 76.778 kb on + strand, within Ac3H11_1258at 76.778 kb on + strand, within Ac3H11_1258at 76.779 kb on - strand, within Ac3H11_1258at 76.779 kb on - strand, within Ac3H11_1258at 76.779 kb on - strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.919 kb on + strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 76.920 kb on - strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.060 kb on + strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.061 kb on - strand, within Ac3H11_1258at 77.168 kb on + strand, within Ac3H11_1258at 77.169 kb on - strand, within Ac3H11_1258at 77.169 kb on - strand, within Ac3H11_1258at 77.183 kb on + strand, within Ac3H11_1258at 77.250 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.327 kb on + strand, within Ac3H11_1258at 77.328 kb on - strand, within Ac3H11_1258at 77.405 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.682 kb on + strandat 77.683 kb on - strandat 77.683 kb on - strandat 77.683 kb on - strandat 77.974 kb on + strand, within Ac3H11_1259at 77.974 kb on + strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 77.975 kb on - strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.127 kb on + strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.128 kb on - strand, within Ac3H11_1259at 78.187 kb on + strand, within Ac3H11_1259at 78.403 kb on + strand, within Ac3H11_1259at 78.403 kb on + strand, within Ac3H11_1259at 78.404 kb on - strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.415 kb on + strand, within Ac3H11_1259at 78.416 kb on - strand, within Ac3H11_1259at 78.416 kb on - strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.427 kb on + strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259at 78.428 kb on - strand, within Ac3H11_1259

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml
remove
75,514 - Ac3H11_1257 0.13 -0.9
75,525 + Ac3H11_1257 0.15 -1.6
75,867 + Ac3H11_1257 0.50 +0.2
75,867 + Ac3H11_1257 0.50 +1.3
75,867 + Ac3H11_1257 0.50 -1.6
75,867 + Ac3H11_1257 0.50 +1.9
75,867 + Ac3H11_1257 0.50 +1.3
75,867 + Ac3H11_1257 0.50 +1.7
75,867 + Ac3H11_1257 0.50 -1.2
75,867 + Ac3H11_1257 0.50 -3.1
75,868 - Ac3H11_1257 0.50 -1.2
75,868 - Ac3H11_1257 0.50 -1.4
75,868 - Ac3H11_1257 0.50 +0.2
75,868 - Ac3H11_1257 0.50 -0.4
75,868 - Ac3H11_1257 0.50 +2.1
75,868 - Ac3H11_1257 0.50 +0.2
75,868 - Ac3H11_1257 0.50 -1.7
75,942 + Ac3H11_1257 0.58 +0.5
75,942 + Ac3H11_1257 0.58 +1.1
75,942 + Ac3H11_1257 0.58 +0.6
75,942 + Ac3H11_1257 0.58 +0.6
75,942 + Ac3H11_1257 0.58 +0.6
75,942 + Ac3H11_1257 0.58 +0.7
75,942 + Ac3H11_1257 0.58 -1.1
75,943 - Ac3H11_1257 0.58 +0.6
75,943 - Ac3H11_1257 0.58 +0.7
75,943 - Ac3H11_1257 0.58 +1.5
75,943 - Ac3H11_1257 0.58 +1.3
75,943 - Ac3H11_1257 0.58 +0.9
75,943 - Ac3H11_1257 0.58 +1.9
75,954 + Ac3H11_1257 0.59 -3.5
75,954 + Ac3H11_1257 0.59 -2.3
75,954 + Ac3H11_1257 0.59 -0.4
75,954 + Ac3H11_1257 0.59 +1.9
75,954 + Ac3H11_1257 0.59 -1.3
75,954 + Ac3H11_1257 0.59 -0.9
75,954 + Ac3H11_1257 0.59 -0.1
75,954 + Ac3H11_1257 0.59 +0.5
75,954 + Ac3H11_1257 0.59 +1.1
75,955 - Ac3H11_1257 0.59 +0.7
75,955 - Ac3H11_1257 0.59 -1.1
75,955 - Ac3H11_1257 0.59 +1.7
75,955 - Ac3H11_1257 0.59 +0.2
75,955 - Ac3H11_1257 0.59 +1.1
76,399 - -2.3
76,448 - +2.7
76,763 + Ac3H11_1258 0.31 +0.3
76,764 - Ac3H11_1258 0.31 +1.9
76,778 + Ac3H11_1258 0.33 -0.1
76,778 + Ac3H11_1258 0.33 +1.8
76,778 + Ac3H11_1258 0.33 +0.2
76,779 - Ac3H11_1258 0.33 -2.7
76,779 - Ac3H11_1258 0.33 -3.5
76,779 - Ac3H11_1258 0.33 -2.0
76,919 + Ac3H11_1258 0.47 -1.4
76,919 + Ac3H11_1258 0.47 -1.3
76,919 + Ac3H11_1258 0.47 -2.2
76,919 + Ac3H11_1258 0.47 -0.4
76,919 + Ac3H11_1258 0.47 -0.7
76,919 + Ac3H11_1258 0.47 -1.3
76,919 + Ac3H11_1258 0.47 +1.4
76,919 + Ac3H11_1258 0.47 +2.6
76,919 + Ac3H11_1258 0.47 +1.7
76,920 - Ac3H11_1258 0.47 -0.1
76,920 - Ac3H11_1258 0.47 +0.0
76,920 - Ac3H11_1258 0.47 -0.3
76,920 - Ac3H11_1258 0.47 -3.7
76,920 - Ac3H11_1258 0.47 +0.6
76,920 - Ac3H11_1258 0.47 -0.5
76,920 - Ac3H11_1258 0.47 +1.0
77,060 + Ac3H11_1258 0.62 -0.0
77,060 + Ac3H11_1258 0.62 -0.3
77,060 + Ac3H11_1258 0.62 +0.7
77,060 + Ac3H11_1258 0.62 -0.1
77,060 + Ac3H11_1258 0.62 -0.7
77,060 + Ac3H11_1258 0.62 -1.9
77,061 - Ac3H11_1258 0.62 +0.4
77,061 - Ac3H11_1258 0.62 -3.4
77,061 - Ac3H11_1258 0.62 +0.1
77,061 - Ac3H11_1258 0.62 +0.0
77,061 - Ac3H11_1258 0.62 +0.5
77,061 - Ac3H11_1258 0.62 +1.0
77,061 - Ac3H11_1258 0.62 +2.4
77,061 - Ac3H11_1258 0.62 -3.2
77,168 + Ac3H11_1258 0.73 -2.1
77,169 - Ac3H11_1258 0.73 -2.4
77,169 - Ac3H11_1258 0.73 +1.6
77,183 + Ac3H11_1258 0.75 +0.4
77,250 + Ac3H11_1258 0.81 -0.6
77,327 + Ac3H11_1258 0.89 +0.4
77,327 + Ac3H11_1258 0.89 -2.0
77,327 + Ac3H11_1258 0.89 -0.5
77,327 + Ac3H11_1258 0.89 -3.2
77,327 + Ac3H11_1258 0.89 +2.9
77,328 - Ac3H11_1258 0.90 -1.8
77,405 + -1.6
77,682 + -3.1
77,682 + +0.4
77,682 + -2.2
77,682 + -2.5
77,682 + -0.2
77,683 - +1.3
77,683 - -2.0
77,683 - -1.4
77,974 + Ac3H11_1259 0.31 -1.6
77,974 + Ac3H11_1259 0.31 +1.0
77,975 - Ac3H11_1259 0.31 -3.0
77,975 - Ac3H11_1259 0.31 +1.5
77,975 - Ac3H11_1259 0.31 +0.1
78,127 + Ac3H11_1259 0.48 -2.8
78,127 + Ac3H11_1259 0.48 -1.5
78,127 + Ac3H11_1259 0.48 +0.8
78,127 + Ac3H11_1259 0.48 +0.6
78,127 + Ac3H11_1259 0.48 -1.1
78,127 + Ac3H11_1259 0.48 -0.9
78,127 + Ac3H11_1259 0.48 +2.0
78,127 + Ac3H11_1259 0.48 +3.4
78,128 - Ac3H11_1259 0.48 -2.3
78,128 - Ac3H11_1259 0.48 +0.4
78,128 - Ac3H11_1259 0.48 +0.4
78,128 - Ac3H11_1259 0.48 +1.9
78,128 - Ac3H11_1259 0.48 +2.5
78,128 - Ac3H11_1259 0.48 +1.4
78,128 - Ac3H11_1259 0.48 -1.1
78,187 + Ac3H11_1259 0.54 -0.0
78,403 + Ac3H11_1259 0.77 +1.2
78,403 + Ac3H11_1259 0.77 -3.1
78,404 - Ac3H11_1259 0.77 +0.6
78,415 + Ac3H11_1259 0.78 +0.5
78,415 + Ac3H11_1259 0.78 -0.7
78,415 + Ac3H11_1259 0.78 +2.3
78,415 + Ac3H11_1259 0.78 +0.0
78,416 - Ac3H11_1259 0.79 -0.6
78,416 - Ac3H11_1259 0.79 -1.1
78,427 + Ac3H11_1259 0.80 -1.5
78,427 + Ac3H11_1259 0.80 +0.4
78,427 + Ac3H11_1259 0.80 +0.5
78,428 - Ac3H11_1259 0.80 -1.1
78,428 - Ac3H11_1259 0.80 +0.2
78,428 - Ac3H11_1259 0.80 -0.5
78,428 - Ac3H11_1259 0.80 -0.4
78,428 - Ac3H11_1259 0.80 +1.5
78,428 - Ac3H11_1259 0.80 -1.1
78,428 - Ac3H11_1259 0.80 +0.6

Or see this region's nucleotide sequence