Experiment: Paraquat dichloride 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_937 and Ac3H11_1045 are separated by 85 nucleotides Ac3H11_1045 and Ac3H11_1046 are separated by 61 nucleotides Ac3H11_1046 and Ac3H11_1047 are separated by 181 nucleotides Ac3H11_1047 and Ac3H11_1048 are separated by 157 nucleotides Ac3H11_1048 and Ac3H11_938 are separated by 67 nucleotides
Ac3H11_937 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 54,968 to 57,400
_937
Ac3H11_1045 - tRNA-Gly-GCC, at 57,486 to 57,558
_1045
Ac3H11_1046 - tRNA-Cys-GCA, at 57,620 to 57,690
_1046
Ac3H11_1047 - tRNA-Gly-GCC, at 57,872 to 57,944
_1047
Ac3H11_1048 - tRNA-Leu-TAA, at 58,102 to 58,191
_1048
Ac3H11_938 - FIG00582348: hypothetical protein, at 58,259 to 58,843
_938
Position (kb) 57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.729 kb on + strand, within Ac3H11_937 at 56.730 kb on - strand, within Ac3H11_937 at 56.730 kb on - strand, within Ac3H11_937 at 56.730 kb on - strand, within Ac3H11_937 at 56.730 kb on - strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.735 kb on + strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 56.736 kb on - strand, within Ac3H11_937 at 57.035 kb on - strand, within Ac3H11_937 at 57.035 kb on - strand, within Ac3H11_937 at 57.463 kb on + strand at 57.470 kb on + strand at 57.705 kb on + strand at 57.705 kb on + strand at 57.705 kb on + strand at 57.764 kb on + strand at 57.764 kb on + strand at 57.764 kb on + strand at 57.855 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 57.966 kb on + strand at 58.196 kb on + strand at 58.217 kb on + strand at 58.217 kb on + strand at 58.218 kb on - strand at 58.218 kb on - strand at 58.218 kb on - strand at 58.218 kb on - strand at 58.316 kb on + strand at 58.316 kb on + strand at 58.358 kb on + strand, within Ac3H11_938 at 58.359 kb on - strand, within Ac3H11_938 at 58.359 kb on - strand, within Ac3H11_938 at 58.359 kb on - strand, within Ac3H11_938 at 58.517 kb on + strand, within Ac3H11_938 at 58.517 kb on + strand, within Ac3H11_938 at 58.518 kb on - strand, within Ac3H11_938 at 58.518 kb on - strand, within Ac3H11_938
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.01 mg/ml remove 56,729 + Ac3H11_937 0.72 -1.6 56,729 + Ac3H11_937 0.72 +0.4 56,729 + Ac3H11_937 0.72 -1.8 56,729 + Ac3H11_937 0.72 -3.0 56,729 + Ac3H11_937 0.72 -0.9 56,729 + Ac3H11_937 0.72 -2.0 56,729 + Ac3H11_937 0.72 -1.4 56,729 + Ac3H11_937 0.72 -2.8 56,729 + Ac3H11_937 0.72 -0.9 56,730 - Ac3H11_937 0.72 -3.7 56,730 - Ac3H11_937 0.72 -0.9 56,730 - Ac3H11_937 0.72 -1.8 56,730 - Ac3H11_937 0.72 -0.7 56,735 + Ac3H11_937 0.73 -0.2 56,735 + Ac3H11_937 0.73 -3.8 56,735 + Ac3H11_937 0.73 -2.4 56,735 + Ac3H11_937 0.73 -2.3 56,735 + Ac3H11_937 0.73 -1.1 56,735 + Ac3H11_937 0.73 -3.3 56,735 + Ac3H11_937 0.73 -2.1 56,735 + Ac3H11_937 0.73 -3.5 56,735 + Ac3H11_937 0.73 -3.1 56,736 - Ac3H11_937 0.73 -2.9 56,736 - Ac3H11_937 0.73 -2.8 56,736 - Ac3H11_937 0.73 -1.6 56,736 - Ac3H11_937 0.73 -2.3 56,736 - Ac3H11_937 0.73 -3.4 56,736 - Ac3H11_937 0.73 +0.4 56,736 - Ac3H11_937 0.73 +0.4 56,736 - Ac3H11_937 0.73 -3.1 57,035 - Ac3H11_937 0.85 -0.0 57,035 - Ac3H11_937 0.85 -3.4 57,463 + -2.2 57,470 + -1.7 57,705 + +0.4 57,705 + -0.9 57,705 + +1.8 57,764 + +0.7 57,764 + -2.4 57,764 + +0.2 57,855 + -1.6 57,966 + -2.9 57,966 + +0.4 57,966 + -1.7 57,966 + +2.2 57,966 + -1.2 57,966 + -0.1 57,966 + +0.0 58,196 + +0.3 58,217 + -0.3 58,217 + -1.0 58,218 - +1.7 58,218 - -1.5 58,218 - +0.9 58,218 - -0.6 58,316 + +0.3 58,316 + +0.4 58,358 + Ac3H11_938 0.17 +0.3 58,359 - Ac3H11_938 0.17 +0.6 58,359 - Ac3H11_938 0.17 -2.3 58,359 - Ac3H11_938 0.17 +1.4 58,517 + Ac3H11_938 0.44 +2.4 58,517 + Ac3H11_938 0.44 -0.7 58,518 - Ac3H11_938 0.44 -0.8 58,518 - Ac3H11_938 0.44 -2.1
Or see this region's nucleotide sequence