Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS27960 and AZOBR_RS27965 are separated by 3 nucleotides AZOBR_RS27965 and AZOBR_RS27970 are separated by 93 nucleotides AZOBR_RS27970 and AZOBR_RS27975 are separated by 86 nucleotides AZOBR_RS27975 and AZOBR_RS27980 are separated by 31 nucleotides
AZOBR_RS27960: AZOBR_RS27960 - multidrug ABC transporter ATP-binding protein, at 443,310 to 446,057
_RS27960
AZOBR_RS27965: AZOBR_RS27965 - membrane protein, at 446,061 to 447,182
_RS27965
AZOBR_RS27970: AZOBR_RS27970 - transposase (fragment), at 447,276 to 447,698
_RS27970
AZOBR_RS27975: AZOBR_RS27975 - transposase, at 447,785 to 447,949
_RS27975
AZOBR_RS27980: AZOBR_RS27980 - sugar ABC transporter ATP-binding protein, at 447,981 to 449,063
_RS27980
Position (kb) 446
447
448 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 445.440 kb on + strand, within AZOBR_RS27960 at 445.572 kb on + strand, within AZOBR_RS27960 at 445.573 kb on - strand, within AZOBR_RS27960 at 445.623 kb on + strand, within AZOBR_RS27960 at 445.624 kb on - strand, within AZOBR_RS27960 at 445.734 kb on + strand, within AZOBR_RS27960 at 445.734 kb on + strand, within AZOBR_RS27960 at 445.735 kb on - strand, within AZOBR_RS27960 at 445.735 kb on - strand, within AZOBR_RS27960 at 446.146 kb on - strand at 446.167 kb on - strand at 446.460 kb on + strand, within AZOBR_RS27965 at 446.460 kb on + strand, within AZOBR_RS27965 at 446.461 kb on - strand, within AZOBR_RS27965 at 447.430 kb on + strand, within AZOBR_RS27970 at 447.442 kb on + strand, within AZOBR_RS27970 at 447.443 kb on - strand, within AZOBR_RS27970 at 447.712 kb on + strand at 447.713 kb on - strand at 447.713 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 445,440 + AZOBR_RS27960 0.78 -0.2 445,572 + AZOBR_RS27960 0.82 -1.1 445,573 - AZOBR_RS27960 0.82 -0.4 445,623 + AZOBR_RS27960 0.84 -0.1 445,624 - AZOBR_RS27960 0.84 -0.8 445,734 + AZOBR_RS27960 0.88 -4.4 445,734 + AZOBR_RS27960 0.88 -0.5 445,735 - AZOBR_RS27960 0.88 -0.4 445,735 - AZOBR_RS27960 0.88 -1.2 446,146 - +0.2 446,167 - -0.5 446,460 + AZOBR_RS27965 0.36 -0.5 446,460 + AZOBR_RS27965 0.36 -1.2 446,461 - AZOBR_RS27965 0.36 +0.2 447,430 + AZOBR_RS27970 0.36 -0.5 447,442 + AZOBR_RS27970 0.39 -0.1 447,443 - AZOBR_RS27970 0.39 -1.5 447,712 + -0.2 447,713 - +0.4 447,713 - +0.0
Or see this region's nucleotide sequence