Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23260

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23250 and AZOBR_RS23255 are separated by 45 nucleotidesAZOBR_RS23255 and AZOBR_RS23260 overlap by 64 nucleotidesAZOBR_RS23260 and AZOBR_RS23265 overlap by 4 nucleotides AZOBR_RS23250: AZOBR_RS23250 - SapC family protein, at 228,562 to 229,287 _RS23250 AZOBR_RS23255: AZOBR_RS23255 - hypothetical protein, at 229,333 to 229,632 _RS23255 AZOBR_RS23260: AZOBR_RS23260 - hypothetical protein, at 229,569 to 236,186 _RS23260 AZOBR_RS23265: AZOBR_RS23265 - hypothetical protein, at 236,183 to 246,661 _RS23265 Position (kb) 229 230 231 232 233 234 235 236 237Strain fitness (log2 ratio) -2 -1 0 1 2at 228.626 kb on + strandat 228.627 kb on - strandat 228.627 kb on - strandat 228.627 kb on - strandat 228.813 kb on + strand, within AZOBR_RS23250at 228.813 kb on + strand, within AZOBR_RS23250at 228.813 kb on + strand, within AZOBR_RS23250at 228.813 kb on + strand, within AZOBR_RS23250at 228.814 kb on - strand, within AZOBR_RS23250at 228.814 kb on - strand, within AZOBR_RS23250at 228.814 kb on - strand, within AZOBR_RS23250at 228.815 kb on + strand, within AZOBR_RS23250at 228.815 kb on + strand, within AZOBR_RS23250at 228.816 kb on - strand, within AZOBR_RS23250at 228.816 kb on - strand, within AZOBR_RS23250at 229.001 kb on + strand, within AZOBR_RS23250at 229.013 kb on + strand, within AZOBR_RS23250at 229.014 kb on - strand, within AZOBR_RS23250at 229.014 kb on - strand, within AZOBR_RS23250at 229.014 kb on - strand, within AZOBR_RS23250at 229.014 kb on - strand, within AZOBR_RS23250at 229.259 kb on + strandat 229.259 kb on + strandat 229.260 kb on - strandat 229.260 kb on - strandat 229.260 kb on - strandat 229.295 kb on + strandat 229.295 kb on + strandat 229.307 kb on - strandat 229.692 kb on + strandat 229.693 kb on - strandat 229.693 kb on - strandat 229.693 kb on - strandat 229.693 kb on - strandat 230.911 kb on + strand, within AZOBR_RS23260at 230.911 kb on + strand, within AZOBR_RS23260at 230.911 kb on + strand, within AZOBR_RS23260at 231.200 kb on - strand, within AZOBR_RS23260at 231.425 kb on - strand, within AZOBR_RS23260at 231.425 kb on - strand, within AZOBR_RS23260at 231.766 kb on + strand, within AZOBR_RS23260at 231.766 kb on + strand, within AZOBR_RS23260at 231.767 kb on - strand, within AZOBR_RS23260at 232.298 kb on - strand, within AZOBR_RS23260at 232.298 kb on - strand, within AZOBR_RS23260at 232.298 kb on - strand, within AZOBR_RS23260at 232.784 kb on - strand, within AZOBR_RS23260at 232.859 kb on - strand, within AZOBR_RS23260at 232.859 kb on - strand, within AZOBR_RS23260at 233.158 kb on + strand, within AZOBR_RS23260at 233.158 kb on + strand, within AZOBR_RS23260at 233.407 kb on + strand, within AZOBR_RS23260at 233.407 kb on + strand, within AZOBR_RS23260at 233.407 kb on + strand, within AZOBR_RS23260at 233.407 kb on + strand, within AZOBR_RS23260at 233.408 kb on - strand, within AZOBR_RS23260at 233.408 kb on - strand, within AZOBR_RS23260at 233.408 kb on - strand, within AZOBR_RS23260at 233.408 kb on - strand, within AZOBR_RS23260at 233.408 kb on - strand, within AZOBR_RS23260at 233.408 kb on - strand, within AZOBR_RS23260at 233.438 kb on - strand, within AZOBR_RS23260at 233.438 kb on - strand, within AZOBR_RS23260at 233.683 kb on + strand, within AZOBR_RS23260at 233.683 kb on + strand, within AZOBR_RS23260at 233.683 kb on + strand, within AZOBR_RS23260at 233.684 kb on - strand, within AZOBR_RS23260at 233.684 kb on - strand, within AZOBR_RS23260at 233.684 kb on - strand, within AZOBR_RS23260at 233.713 kb on + strand, within AZOBR_RS23260at 233.713 kb on + strand, within AZOBR_RS23260at 233.713 kb on + strand, within AZOBR_RS23260at 233.714 kb on - strand, within AZOBR_RS23260at 233.851 kb on + strand, within AZOBR_RS23260at 233.851 kb on + strand, within AZOBR_RS23260at 234.512 kb on - strand, within AZOBR_RS23260at 234.512 kb on - strand, within AZOBR_RS23260at 234.512 kb on - strand, within AZOBR_RS23260at 234.512 kb on - strand, within AZOBR_RS23260at 234.542 kb on - strand, within AZOBR_RS23260at 234.679 kb on + strand, within AZOBR_RS23260at 234.679 kb on + strand, within AZOBR_RS23260at 234.680 kb on - strand, within AZOBR_RS23260at 234.790 kb on + strand, within AZOBR_RS23260at 234.790 kb on + strand, within AZOBR_RS23260at 234.790 kb on + strand, within AZOBR_RS23260at 234.790 kb on + strand, within AZOBR_RS23260at 234.791 kb on - strand, within AZOBR_RS23260at 234.820 kb on + strand, within AZOBR_RS23260at 234.820 kb on + strand, within AZOBR_RS23260at 234.821 kb on - strand, within AZOBR_RS23260at 234.958 kb on + strand, within AZOBR_RS23260at 235.014 kb on - strand, within AZOBR_RS23260at 235.066 kb on + strandat 235.066 kb on + strand, within AZOBR_RS23260at 235.067 kb on - strand, within AZOBR_RS23260at 235.067 kb on - strand, within AZOBR_RS23260at 235.096 kb on + strand, within AZOBR_RS23260at 235.097 kb on - strand, within AZOBR_RS23260at 235.097 kb on - strand, within AZOBR_RS23260at 235.349 kb on - strand, within AZOBR_RS23260at 235.379 kb on - strand, within AZOBR_RS23260at 235.379 kb on - strand, within AZOBR_RS23260at 235.441 kb on + strand, within AZOBR_RS23260at 235.441 kb on + strand, within AZOBR_RS23260at 235.651 kb on + strandat 235.652 kb on - strandat 235.745 kb on - strandat 235.745 kb on - strandat 235.745 kb on - strandat 235.921 kb on + strandat 235.921 kb on + strandat 236.562 kb on + strandat 236.562 kb on + strandat 236.562 kb on + strandat 236.562 kb on + strandat 236.563 kb on - strandat 236.563 kb on - strandat 236.961 kb on + strandat 236.961 kb on + strandat 236.962 kb on - strandat 237.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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228,626 + +2.3
228,627 - -1.1
228,627 - +0.1
228,627 - +1.4
228,813 + AZOBR_RS23250 0.35 -0.5
228,813 + AZOBR_RS23250 0.35 -0.0
228,813 + AZOBR_RS23250 0.35 +0.6
228,813 + AZOBR_RS23250 0.35 -0.5
228,814 - AZOBR_RS23250 0.35 -1.0
228,814 - AZOBR_RS23250 0.35 -0.5
228,814 - AZOBR_RS23250 0.35 +0.4
228,815 + AZOBR_RS23250 0.35 +2.5
228,815 + AZOBR_RS23250 0.35 -0.2
228,816 - AZOBR_RS23250 0.35 +2.0
228,816 - AZOBR_RS23250 0.35 -0.6
229,001 + AZOBR_RS23250 0.60 +0.7
229,013 + AZOBR_RS23250 0.62 +0.2
229,014 - AZOBR_RS23250 0.62 -0.1
229,014 - AZOBR_RS23250 0.62 +0.5
229,014 - AZOBR_RS23250 0.62 -0.0
229,014 - AZOBR_RS23250 0.62 +0.4
229,259 + -0.6
229,259 + +0.6
229,260 - -0.7
229,260 - +1.1
229,260 - +0.6
229,295 + -1.7
229,295 + +0.6
229,307 - -0.3
229,692 + +0.8
229,693 - -0.3
229,693 - -1.1
229,693 - +0.4
229,693 - -0.7
230,911 + AZOBR_RS23260 0.20 +0.1
230,911 + AZOBR_RS23260 0.20 +0.1
230,911 + AZOBR_RS23260 0.20 -0.0
231,200 - AZOBR_RS23260 0.25 +0.7
231,425 - AZOBR_RS23260 0.28 +0.1
231,425 - AZOBR_RS23260 0.28 +0.3
231,766 + AZOBR_RS23260 0.33 +0.2
231,766 + AZOBR_RS23260 0.33 -0.8
231,767 - AZOBR_RS23260 0.33 -0.6
232,298 - AZOBR_RS23260 0.41 +1.4
232,298 - AZOBR_RS23260 0.41 +1.2
232,298 - AZOBR_RS23260 0.41 -0.2
232,784 - AZOBR_RS23260 0.49 +1.2
232,859 - AZOBR_RS23260 0.50 -0.1
232,859 - AZOBR_RS23260 0.50 +0.6
233,158 + AZOBR_RS23260 0.54 +0.5
233,158 + AZOBR_RS23260 0.54 +0.1
233,407 + AZOBR_RS23260 0.58 -0.3
233,407 + AZOBR_RS23260 0.58 +0.3
233,407 + AZOBR_RS23260 0.58 -1.0
233,407 + AZOBR_RS23260 0.58 -1.0
233,408 - AZOBR_RS23260 0.58 +0.6
233,408 - AZOBR_RS23260 0.58 +0.1
233,408 - AZOBR_RS23260 0.58 +0.2
233,408 - AZOBR_RS23260 0.58 -1.0
233,408 - AZOBR_RS23260 0.58 +1.1
233,408 - AZOBR_RS23260 0.58 -0.1
233,438 - AZOBR_RS23260 0.58 -0.3
233,438 - AZOBR_RS23260 0.58 +0.6
233,683 + AZOBR_RS23260 0.62 +0.3
233,683 + AZOBR_RS23260 0.62 +1.2
233,683 + AZOBR_RS23260 0.62 -0.9
233,684 - AZOBR_RS23260 0.62 +1.0
233,684 - AZOBR_RS23260 0.62 +0.6
233,684 - AZOBR_RS23260 0.62 +0.5
233,713 + AZOBR_RS23260 0.63 +0.2
233,713 + AZOBR_RS23260 0.63 -1.6
233,713 + AZOBR_RS23260 0.63 +1.9
233,714 - AZOBR_RS23260 0.63 +1.6
233,851 + AZOBR_RS23260 0.65 -0.9
233,851 + AZOBR_RS23260 0.65 +1.5
234,512 - AZOBR_RS23260 0.75 -0.1
234,512 - AZOBR_RS23260 0.75 -0.4
234,512 - AZOBR_RS23260 0.75 -0.7
234,512 - AZOBR_RS23260 0.75 +0.4
234,542 - AZOBR_RS23260 0.75 +0.8
234,679 + AZOBR_RS23260 0.77 +0.0
234,679 + AZOBR_RS23260 0.77 +0.8
234,680 - AZOBR_RS23260 0.77 +0.7
234,790 + AZOBR_RS23260 0.79 -1.4
234,790 + AZOBR_RS23260 0.79 +0.0
234,790 + AZOBR_RS23260 0.79 +0.5
234,790 + AZOBR_RS23260 0.79 +0.9
234,791 - AZOBR_RS23260 0.79 +1.6
234,820 + AZOBR_RS23260 0.79 +1.3
234,820 + AZOBR_RS23260 0.79 +0.2
234,821 - AZOBR_RS23260 0.79 +0.5
234,958 + AZOBR_RS23260 0.81 +0.9
235,014 - AZOBR_RS23260 0.82 -0.4
235,066 + -0.1
235,066 + AZOBR_RS23260 0.83 -0.1
235,067 - AZOBR_RS23260 0.83 +0.7
235,067 - AZOBR_RS23260 0.83 -0.5
235,096 + AZOBR_RS23260 0.84 -1.0
235,097 - AZOBR_RS23260 0.84 -0.1
235,097 - AZOBR_RS23260 0.84 +0.9
235,349 - AZOBR_RS23260 0.87 -2.2
235,379 - AZOBR_RS23260 0.88 +0.1
235,379 - AZOBR_RS23260 0.88 -0.2
235,441 + AZOBR_RS23260 0.89 +0.5
235,441 + AZOBR_RS23260 0.89 +0.7
235,651 + -1.0
235,652 - -1.0
235,745 - +0.0
235,745 - -1.2
235,745 - +0.3
235,921 + -0.2
235,921 + +0.6
236,562 + -0.9
236,562 + +0.8
236,562 + +0.4
236,562 + -0.2
236,563 - +0.4
236,563 - -0.3
236,961 + -0.2
236,961 + -0.5
236,962 - +0.4
237,100 - +0.5

Or see this region's nucleotide sequence