Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03230 and AZOBR_RS03235 are separated by 27 nucleotides AZOBR_RS03235 and AZOBR_RS03240 are separated by 134 nucleotides AZOBR_RS03240 and AZOBR_RS03245 are separated by 141 nucleotides
AZOBR_RS03230: AZOBR_RS03230 - hypothetical protein, at 686,468 to 687,238
_RS03230
AZOBR_RS03235: AZOBR_RS03235 - hypothetical protein, at 687,266 to 687,667
_RS03235
AZOBR_RS03240: AZOBR_RS03240 - recombinase XerD, at 687,802 to 688,683
_RS03240
AZOBR_RS03245: AZOBR_RS03245 - malate synthase, at 688,825 to 690,429
_RS03245
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1 at 687.175 kb on - strand at 687.821 kb on - strand at 687.907 kb on + strand, within AZOBR_RS03240 at 688.681 kb on + strand at 688.754 kb on - strand at 688.755 kb on + strand at 689.279 kb on - strand, within AZOBR_RS03245 at 689.398 kb on + strand, within AZOBR_RS03245 at 689.446 kb on + strand, within AZOBR_RS03245 at 689.452 kb on + strand, within AZOBR_RS03245 at 689.452 kb on + strand, within AZOBR_RS03245 at 689.452 kb on + strand, within AZOBR_RS03245 at 689.453 kb on - strand, within AZOBR_RS03245 at 689.521 kb on + strand, within AZOBR_RS03245 at 689.522 kb on - strand, within AZOBR_RS03245 at 689.522 kb on - strand, within AZOBR_RS03245 at 689.606 kb on - strand, within AZOBR_RS03245 at 689.606 kb on - strand, within AZOBR_RS03245 at 689.654 kb on - strand, within AZOBR_RS03245
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 687,175 - +1.0 687,821 - -0.6 687,907 + AZOBR_RS03240 0.12 -2.4 688,681 + +0.2 688,754 - -0.6 688,755 + -1.0 689,279 - AZOBR_RS03245 0.28 +0.4 689,398 + AZOBR_RS03245 0.36 +0.2 689,446 + AZOBR_RS03245 0.39 -0.6 689,452 + AZOBR_RS03245 0.39 -0.2 689,452 + AZOBR_RS03245 0.39 +0.1 689,452 + AZOBR_RS03245 0.39 +1.2 689,453 - AZOBR_RS03245 0.39 +0.4 689,521 + AZOBR_RS03245 0.43 -0.4 689,522 - AZOBR_RS03245 0.43 +0.6 689,522 - AZOBR_RS03245 0.43 +0.2 689,606 - AZOBR_RS03245 0.49 +0.9 689,606 - AZOBR_RS03245 0.49 +1.4 689,654 - AZOBR_RS03245 0.52 -0.3
Or see this region's nucleotide sequence