Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4007

Experiment: L-Alanine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (N)
4,810,404	+		Shewana3_4006	0.19	-0.1
4,810,412	-		Shewana3_4006	0.20	+0.2
4,810,422	+		Shewana3_4006	0.21	-0.7
4,810,422	+		Shewana3_4006	0.21	+0.3
4,810,430	-		Shewana3_4006	0.21	+0.8
4,810,442	+		Shewana3_4006	0.22	+0.2
4,810,451	+		Shewana3_4006	0.23	+1.4
4,810,470	+		Shewana3_4006	0.25	+0.3
4,810,470	+		Shewana3_4006	0.25	+2.6
4,810,489	-		Shewana3_4006	0.26	-4.1
4,810,541	+		Shewana3_4006	0.30	-1.3
4,810,549	-		Shewana3_4006	0.31	-2.0
4,810,557	+		Shewana3_4006	0.32	-3.3
4,810,572	-		Shewana3_4006	0.33	-1.3
4,810,620	+		Shewana3_4006	0.37	+0.3
4,810,620	+		Shewana3_4006	0.37	+0.6
4,810,620	+		Shewana3_4006	0.37	-0.3
4,810,826	+		Shewana3_4006	0.53	-0.3
4,810,834	-		Shewana3_4006	0.54	-0.4
4,810,834	-		Shewana3_4006	0.54	-0.0
4,810,870	+		Shewana3_4006	0.57	+1.7
4,810,904	+		Shewana3_4006	0.60	-0.1
4,810,913	-		Shewana3_4006	0.60	-0.6
4,810,990	-		Shewana3_4006	0.67	+0.3
4,810,990	-		Shewana3_4006	0.67	-0.5
4,810,990	-		Shewana3_4006	0.67	-0.9
4,810,998	-		Shewana3_4006	0.67	-1.5
4,811,021	-		Shewana3_4006	0.69	-0.9
4,811,021	-		Shewana3_4006	0.69	-0.8
4,811,023	-		Shewana3_4006	0.69	+0.7
4,811,034	+		Shewana3_4006	0.70	+0.3
4,811,037	-		Shewana3_4006	0.70	+0.2
4,811,039	+		Shewana3_4006	0.70	-1.2
4,811,039	+		Shewana3_4006	0.70	-0.5
4,811,042	-		Shewana3_4006	0.71	-0.9
4,811,098	+		Shewana3_4006	0.75	-0.2
4,811,106	-		Shewana3_4006	0.76	-0.4
4,811,106	-		Shewana3_4006	0.76	-1.6
4,811,106	-		Shewana3_4006	0.76	+2.1
4,811,106	-		Shewana3_4006	0.76	-3.1
4,811,106	-		Shewana3_4006	0.76	+0.3
4,811,106	-		Shewana3_4006	0.76	-0.4
4,811,149	-		Shewana3_4006	0.79	-1.0
4,811,232	+		Shewana3_4006	0.86	+0.3
4,811,238	+		Shewana3_4006	0.86	+1.8
4,811,246	-		Shewana3_4006	0.87	+0.5
4,811,257	+		Shewana3_4006	0.88	+2.5
4,811,265	-		Shewana3_4006	0.89	+2.7
4,811,265	-		Shewana3_4006	0.89	-1.7
4,811,286	+				+0.2
4,811,291	+				-2.9
4,811,294	-				+1.9
4,811,309	-				-0.4
4,811,315	-				-0.5
4,811,338	+				-1.1
4,811,383	+				+1.8
4,811,383	+				+0.1
4,811,396	-				-0.8
4,811,421	+				+0.9
4,811,429	-				-0.0
4,811,475	+		Shewana3_4007	0.12	-1.1
4,811,501	-		Shewana3_4007	0.16	-0.4
4,811,635	+		Shewana3_4007	0.36	+1.5
4,811,637	-		Shewana3_4007	0.36	-0.6
4,811,698	+		Shewana3_4007	0.45	-0.3
4,811,706	-		Shewana3_4007	0.46	+0.2
4,811,711	+		Shewana3_4007	0.47	-1.9
4,811,719	-		Shewana3_4007	0.48	+0.4
4,811,751	-		Shewana3_4007	0.53	+0.3
4,811,772	-		Shewana3_4007	0.56	+0.7
4,811,801	-		Shewana3_4007	0.60	-0.3
4,811,811	-		Shewana3_4007	0.62	-0.6
4,811,823	-		Shewana3_4007	0.64	-0.5
4,811,863	-		Shewana3_4007	0.69	-1.1
4,811,876	-		Shewana3_4007	0.71	-0.7
4,811,884	+		Shewana3_4007	0.73	+0.9
4,811,930	-		Shewana3_4007	0.79	-0.2
4,811,932	+		Shewana3_4007	0.80	+0.2
4,811,940	+		Shewana3_4007	0.81	+0.4
4,811,981	-		Shewana3_4007	0.87	+0.9
4,811,990	+		Shewana3_4007	0.88	+1.9
4,811,998	-		Shewana3_4007	0.89	+0.2
4,812,014	-				-2.0
4,812,021	-				+0.0
4,812,166	+		Shewana3_4008	0.13	-1.9
4,812,167	+		Shewana3_4008	0.13	-0.2
4,812,167	+		Shewana3_4008	0.13	+0.7
4,812,167	+		Shewana3_4008	0.13	-1.5
4,812,167	+		Shewana3_4008	0.13	+0.3
4,812,175	-		Shewana3_4008	0.14	+0.1
4,812,175	-		Shewana3_4008	0.14	+0.0
4,812,175	-		Shewana3_4008	0.14	-0.5
4,812,207	+		Shewana3_4008	0.18	+0.9
4,812,220	-		Shewana3_4008	0.20	+0.6
4,812,283	+		Shewana3_4008	0.28	-0.9
4,812,285	-		Shewana3_4008	0.29	-2.5
4,812,306	+		Shewana3_4008	0.31	+0.7
4,812,330	-		Shewana3_4008	0.35	-0.9
4,812,330	-		Shewana3_4008	0.35	+1.7
4,812,344	-		Shewana3_4008	0.36	-1.1
4,812,345	-		Shewana3_4008	0.37	+0.5
4,812,405	-		Shewana3_4008	0.45	+0.6
4,812,405	-		Shewana3_4008	0.45	+0.5
4,812,430	-		Shewana3_4008	0.48	+1.2
4,812,432	+		Shewana3_4008	0.48	+0.6
4,812,432	+		Shewana3_4008	0.48	+0.4
4,812,432	+		Shewana3_4008	0.48	+0.2
4,812,432	+		Shewana3_4008	0.48	+1.0
4,812,432	+		Shewana3_4008	0.48	+1.2
4,812,432	+		Shewana3_4008	0.48	-0.8
4,812,432	+		Shewana3_4008	0.48	+0.4
4,812,432	+		Shewana3_4008	0.48	+1.5
4,812,440	-		Shewana3_4008	0.49	-2.2
4,812,440	-		Shewana3_4008	0.49	-0.1
4,812,440	-		Shewana3_4008	0.49	+1.4
4,812,440	-		Shewana3_4008	0.49	+1.1
4,812,440	-		Shewana3_4008	0.49	+0.4
4,812,440	-		Shewana3_4008	0.49	+0.7
4,812,440	-		Shewana3_4008	0.49	-0.1
4,812,521	-		Shewana3_4008	0.60	+0.5
4,812,594	+		Shewana3_4008	0.70	+2.6
4,812,595	+		Shewana3_4008	0.70	-0.0
4,812,608	-		Shewana3_4008	0.72	+1.1
4,812,633	-		Shewana3_4008	0.75	+0.6
4,812,687	+		Shewana3_4008	0.82	+0.2
4,812,695	+		Shewana3_4008	0.83	-1.3
4,812,719	+		Shewana3_4008	0.87	+0.5
4,812,727	-		Shewana3_4008	0.88	-0.4
4,812,727	-		Shewana3_4008	0.88	+0.0
4,812,753	-				-0.0
4,812,824	+				-0.3
4,812,898	-				-0.6
4,812,948	+				+2.1